Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2427

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2425 and GFF2426 are separated by 122 nucleotidesGFF2426 and GFF2427 are separated by 30 nucleotidesGFF2427 and GFF2428 are separated by 14 nucleotidesGFF2428 and GFF2429 overlap by 4 nucleotides GFF2425 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,883 to 5,626 GFF2425 GFF2426 - Sugar phosphate isomerases/epimerases, at 5,749 to 6,501 GFF2426 GFF2427 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 6,532 to 7,566 GFF2427 GFF2428 - TRAP-type C4-dicarboxylate transport system, small permease component, at 7,581 to 8,162 GFF2428 GFF2429 - TRAP-type C4-dicarboxylate transport system, large permease component, at 8,159 to 9,439 GFF2429 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5.621 kb on + strandat 5.621 kb on + strandat 5.622 kb on - strandat 5.622 kb on - strandat 5.622 kb on - strandat 6.075 kb on - strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.107 kb on - strand, within GFF2426at 6.159 kb on + strand, within GFF2426at 6.160 kb on - strand, within GFF2426at 6.238 kb on + strand, within GFF2426at 6.239 kb on - strand, within GFF2426at 6.535 kb on + strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.547 kb on + strandat 6.547 kb on + strandat 6.548 kb on - strandat 6.548 kb on - strandat 6.548 kb on - strandat 6.661 kb on + strand, within GFF2427at 6.661 kb on + strand, within GFF2427at 6.813 kb on + strand, within GFF2427at 6.985 kb on - strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.094 kb on - strand, within GFF2427at 7.153 kb on + strand, within GFF2427at 7.154 kb on - strand, within GFF2427at 7.226 kb on - strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.498 kb on + strandat 7.498 kb on + strandat 7.498 kb on + strandat 7.499 kb on - strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.605 kb on + strandat 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 8.153 kb on + strandat 8.154 kb on - strandat 8.154 kb on - strandat 8.197 kb on + strandat 8.198 kb on - strandat 8.222 kb on + strandat 8.223 kb on - strandat 8.344 kb on + strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.441 kb on + strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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5,621 + +0.3
5,621 + -0.9
5,622 - +1.0
5,622 - -1.8
5,622 - -1.1
6,075 - GFF2426 0.43 -0.3
6,106 + GFF2426 0.47 -2.0
6,106 + GFF2426 0.47 +0.2
6,106 + GFF2426 0.47 -0.5
6,106 + GFF2426 0.47 -2.1
6,107 - GFF2426 0.48 -2.3
6,159 + GFF2426 0.54 -0.9
6,160 - GFF2426 0.55 -0.1
6,238 + GFF2426 0.65 -0.0
6,239 - GFF2426 0.65 +1.6
6,535 + +0.6
6,536 - -0.2
6,536 - -0.3
6,536 - +0.2
6,536 - +0.2
6,536 - -0.1
6,536 - -0.2
6,536 - +1.1
6,547 + -0.3
6,547 + +0.4
6,548 - -0.5
6,548 - +1.1
6,548 - +0.1
6,661 + GFF2427 0.12 +0.1
6,661 + GFF2427 0.12 -1.3
6,813 + GFF2427 0.27 +0.1
6,985 - GFF2427 0.44 -0.4
7,093 + GFF2427 0.54 +0.2
7,093 + GFF2427 0.54 -0.1
7,093 + GFF2427 0.54 +0.4
7,093 + GFF2427 0.54 +0.1
7,094 - GFF2427 0.54 +0.1
7,153 + GFF2427 0.60 -0.7
7,154 - GFF2427 0.60 -2.1
7,226 - GFF2427 0.67 -0.5
7,240 + GFF2427 0.68 +0.2
7,240 + GFF2427 0.68 -0.9
7,240 + GFF2427 0.68 -0.1
7,240 + GFF2427 0.68 +1.6
7,240 + GFF2427 0.68 -0.4
7,240 + GFF2427 0.68 -0.7
7,240 + GFF2427 0.68 +0.2
7,241 - GFF2427 0.69 +0.7
7,241 - GFF2427 0.69 +1.2
7,241 - GFF2427 0.69 -0.1
7,241 - GFF2427 0.69 +0.4
7,264 + GFF2427 0.71 -0.5
7,264 + GFF2427 0.71 -0.4
7,264 + GFF2427 0.71 -0.1
7,264 + GFF2427 0.71 -1.5
7,264 + GFF2427 0.71 -0.3
7,264 + GFF2427 0.71 -0.4
7,264 + GFF2427 0.71 -0.3
7,264 + GFF2427 0.71 +0.4
7,265 - GFF2427 0.71 -0.5
7,265 - GFF2427 0.71 -0.6
7,265 - GFF2427 0.71 -0.7
7,265 - GFF2427 0.71 +3.6
7,265 - GFF2427 0.71 -0.4
7,265 - GFF2427 0.71 -0.8
7,265 - GFF2427 0.71 +0.9
7,498 + +0.8
7,498 + -0.5
7,498 + -0.1
7,499 - -1.6
7,565 - -1.3
7,565 - -0.1
7,605 + +0.2
7,965 + GFF2428 0.66 +0.4
7,965 + GFF2428 0.66 -0.5
7,965 + GFF2428 0.66 -0.3
7,965 + GFF2428 0.66 +0.9
8,153 + -0.5
8,154 - +0.1
8,154 - -0.4
8,197 + +0.4
8,198 - -0.6
8,222 + +0.4
8,223 - -0.9
8,344 + GFF2429 0.14 -0.1
8,345 - GFF2429 0.15 +0.1
8,345 - GFF2429 0.15 -0.0
8,441 + GFF2429 0.22 +0.5
8,442 - GFF2429 0.22 +0.7
8,442 - GFF2429 0.22 -0.9
8,526 + GFF2429 0.29 +0.8
8,526 + GFF2429 0.29 +0.3
8,526 + GFF2429 0.29 -0.8
8,526 + GFF2429 0.29 -0.5
8,526 + GFF2429 0.29 +0.4
8,527 - GFF2429 0.29 +0.2
8,527 - GFF2429 0.29 +0.3
8,527 - GFF2429 0.29 +0.3
8,527 - GFF2429 0.29 +0.7
8,527 - GFF2429 0.29 +0.1
8,530 + GFF2429 0.29 -1.3
8,530 + GFF2429 0.29 -0.6
8,530 + GFF2429 0.29 +0.5
8,530 + GFF2429 0.29 +0.6
8,530 + GFF2429 0.29 -0.9
8,530 + GFF2429 0.29 -0.6
8,530 + GFF2429 0.29 -1.4
8,530 + GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 -1.6
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 -0.4
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 +1.1
8,531 - GFF2429 0.29 +0.0
8,531 - GFF2429 0.29 -0.9
8,531 - GFF2429 0.29 +0.6
8,531 - GFF2429 0.29 -0.4
8,531 - GFF2429 0.29 +0.4
8,531 - GFF2429 0.29 -0.5
8,531 - GFF2429 0.29 -0.9
8,531 - GFF2429 0.29 -0.6
8,531 - GFF2429 0.29 +1.1
8,531 - GFF2429 0.29 +0.4
8,531 - GFF2429 0.29 -0.1
8,531 - GFF2429 0.29 +0.3

Or see this region's nucleotide sequence