Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2373 and GFF2374 are separated by 139 nucleotides GFF2374 and GFF2375 are separated by 14 nucleotides
GFF2373 - Type I secretion system, outer membrane component LapE, at 13,022 to 14,269
GFF2373
GFF2374 - Type I secretion system ATPase, LssB family LapB, at 14,409 to 16,562
GFF2374
GFF2375 - Type I secretion system, membrane fusion protein LapC, at 16,577 to 17,764
GFF2375
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.084 kb on + strand, within GFF2373 at 14.881 kb on - strand, within GFF2374 at 14.907 kb on + strand, within GFF2374 at 14.907 kb on + strand, within GFF2374 at 15.021 kb on + strand, within GFF2374 at 15.199 kb on + strand, within GFF2374 at 15.200 kb on - strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.507 kb on + strand, within GFF2374 at 15.508 kb on - strand, within GFF2374 at 15.508 kb on - strand, within GFF2374 at 15.508 kb on - strand, within GFF2374 at 15.508 kb on - strand, within GFF2374 at 15.534 kb on + strand, within GFF2374 at 15.535 kb on - strand, within GFF2374 at 15.590 kb on - strand, within GFF2374 at 15.590 kb on - strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.778 kb on - strand, within GFF2374 at 15.900 kb on + strand, within GFF2374 at 15.900 kb on + strand, within GFF2374 at 15.901 kb on - strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.944 kb on - strand, within GFF2374 at 15.944 kb on - strand, within GFF2374 at 15.985 kb on - strand, within GFF2374 at 15.985 kb on - strand, within GFF2374 at 16.199 kb on + strand, within GFF2374 at 16.199 kb on + strand, within GFF2374 at 16.200 kb on - strand, within GFF2374 at 16.561 kb on - strand at 16.587 kb on + strand at 16.587 kb on + strand at 16.588 kb on - strand at 16.979 kb on + strand, within GFF2375 at 16.979 kb on + strand, within GFF2375 at 16.980 kb on - strand, within GFF2375 at 17.148 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.364 kb on + strand, within GFF2375 at 17.492 kb on + strand, within GFF2375 at 17.493 kb on - strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.499 kb on - strand, within GFF2375 at 17.499 kb on - strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.508 kb on - strand, within GFF2375 at 17.508 kb on - strand, within GFF2375 at 17.508 kb on - strand, within GFF2375
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 14,084 + GFF2373 0.85 +0.2 14,881 - GFF2374 0.22 -0.0 14,907 + GFF2374 0.23 -0.3 14,907 + GFF2374 0.23 +1.5 15,021 + GFF2374 0.28 +0.7 15,199 + GFF2374 0.37 +0.5 15,200 - GFF2374 0.37 +1.4 15,507 + GFF2374 0.51 +0.3 15,507 + GFF2374 0.51 -0.0 15,507 + GFF2374 0.51 +0.6 15,507 + GFF2374 0.51 +1.0 15,507 + GFF2374 0.51 +0.0 15,507 + GFF2374 0.51 -0.2 15,508 - GFF2374 0.51 -0.5 15,508 - GFF2374 0.51 -0.5 15,508 - GFF2374 0.51 -0.2 15,508 - GFF2374 0.51 +0.4 15,534 + GFF2374 0.52 +0.6 15,535 - GFF2374 0.52 -0.5 15,590 - GFF2374 0.55 -0.2 15,590 - GFF2374 0.55 -0.0 15,777 + GFF2374 0.64 -0.2 15,777 + GFF2374 0.64 +0.2 15,777 + GFF2374 0.64 +0.6 15,778 - GFF2374 0.64 -0.2 15,900 + GFF2374 0.69 +1.2 15,900 + GFF2374 0.69 -0.4 15,901 - GFF2374 0.69 -0.2 15,943 + GFF2374 0.71 +1.0 15,943 + GFF2374 0.71 +0.1 15,943 + GFF2374 0.71 -0.4 15,943 + GFF2374 0.71 -0.5 15,943 + GFF2374 0.71 +0.4 15,944 - GFF2374 0.71 -0.4 15,944 - GFF2374 0.71 -0.1 15,985 - GFF2374 0.73 +0.5 15,985 - GFF2374 0.73 +1.0 16,199 + GFF2374 0.83 -0.3 16,199 + GFF2374 0.83 +0.2 16,200 - GFF2374 0.83 -0.2 16,561 - -0.8 16,587 + -0.1 16,587 + +0.8 16,588 - -0.1 16,979 + GFF2375 0.34 +0.1 16,979 + GFF2375 0.34 -0.3 16,980 - GFF2375 0.34 -0.3 17,148 + GFF2375 0.48 +0.0 17,201 + GFF2375 0.53 -0.8 17,201 + GFF2375 0.53 +0.0 17,201 + GFF2375 0.53 -0.4 17,201 + GFF2375 0.53 +1.3 17,201 + GFF2375 0.53 +0.8 17,202 - GFF2375 0.53 +0.3 17,202 - GFF2375 0.53 -0.1 17,202 - GFF2375 0.53 +0.2 17,364 + GFF2375 0.66 +1.1 17,492 + GFF2375 0.77 -0.1 17,493 - GFF2375 0.77 -0.3 17,498 + GFF2375 0.78 +0.0 17,498 + GFF2375 0.78 -0.6 17,498 + GFF2375 0.78 -2.4 17,499 - GFF2375 0.78 -0.6 17,499 - GFF2375 0.78 -0.8 17,507 + GFF2375 0.78 -0.3 17,507 + GFF2375 0.78 -0.1 17,507 + GFF2375 0.78 +0.7 17,508 - GFF2375 0.78 -1.3 17,508 - GFF2375 0.78 -0.6 17,508 - GFF2375 0.78 +0.4
Or see this region's nucleotide sequence