Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2343

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,235,659	+				-0.8
1,235,690	+				+0.3
1,235,690	+				-0.5
1,235,690	+				-0.0
1,235,690	+				-0.7
1,235,690	+				+0.1
1,235,690	+				-0.1
1,235,690	+				+1.7
1,235,691	-				-0.1
1,235,691	-				+1.7
1,235,691	-				-0.4
1,235,691	-				+0.3
1,235,691	-				-0.9
1,235,691	-				-0.3
1,235,691	-				-0.2
1,235,708	+				+0.3
1,235,709	-				-0.5
1,235,709	-				+0.0
1,235,709	-				-0.6
1,235,729	+				+0.2
1,235,730	-				+0.7
1,235,730	-				-0.0
1,235,730	-				-0.9
1,235,730	-				-0.3
1,235,760	+				+0.5
1,235,760	+				-0.3
1,235,760	+				-0.6
1,235,760	+				-0.4
1,235,760	+				-0.4
1,235,760	+				+0.7
1,235,760	+				-1.3
1,235,760	+				-0.5
1,235,761	-				+0.1
1,235,761	-				-0.6
1,235,761	-				+0.3
1,235,761	-				+0.0
1,235,761	-				-0.1
1,235,808	+				+0.3
1,235,808	+				-1.5
1,235,808	+				+0.2
1,235,808	+				+0.4
1,235,808	+				-0.9
1,235,808	+				-1.1
1,235,808	+				+1.0
1,235,809	-				-0.7
1,235,809	-				+0.2
1,235,809	-				+0.1
1,235,809	-				-0.3
1,235,809	-				-0.1
1,235,824	+				+0.3
1,235,824	+				-0.5
1,235,825	-				-0.2
1,235,825	-				+0.5
1,235,875	+				+1.5
1,235,875	+				-0.5
1,235,875	+				-0.2
1,235,876	-				-0.6
1,235,960	-				-0.0
1,235,960	-				+0.2
1,235,984	+				+0.1
1,236,055	-				-0.5
1,236,077	+				+0.7
1,236,077	+				+0.2
1,236,078	-				-0.0
1,236,078	-				-0.7
1,236,078	-				+0.1
1,236,078	-				+0.5
1,236,084	+				-0.4
1,236,084	+				+0.1
1,236,084	+				+0.2
1,236,084	+				-1.3
1,236,084	+				-2.4
1,236,084	+				-0.2
1,236,085	-				+0.1
1,236,085	-				-1.3
1,236,085	-				-0.2
1,236,140	-				+0.3
1,236,158	+				+0.1
1,236,159	-				+0.1
1,236,172	+				+0.0
1,236,173	-				+0.7
1,236,205	+				+0.7
1,236,205	+				-0.0
1,236,205	+				-0.3
1,236,205	+				-0.5
1,236,206	-				+0.7
1,236,206	-				-0.1
1,236,206	-				-0.9
1,236,207	-				+0.3
1,236,278	+				+0.5
1,236,278	+				-0.0
1,236,278	+				-0.0
1,236,279	-				-0.3
1,236,279	-				+0.5
1,236,286	+				-0.9
1,236,286	+				-0.5
1,236,295	+				+0.4
1,236,295	+				-0.2
1,236,307	+				+0.2
1,236,307	+				-0.5
1,236,307	+				+0.0
1,236,308	-				+0.4
1,236,308	-				+0.0
1,236,308	-				-1.2
1,236,308	-				+0.2
1,236,322	-				+0.3
1,236,347	+				-0.2
1,236,347	+				+0.1
1,236,347	+				-0.8
1,236,348	-				-0.0
1,236,348	-				-0.4
1,236,502	-				+1.3
1,236,502	-				-1.7
1,236,536	-				+0.0
1,236,536	-				+1.7
1,236,550	+				+0.2
1,236,550	+				+0.4
1,236,551	-				-0.3
1,236,551	-				-0.3
1,236,562	-				+0.2
1,236,712	+				-1.1
1,236,713	-				-0.1
1,236,713	-				-0.5
1,236,714	+				+0.7
1,236,714	+				+0.1
1,236,715	-				+0.9
1,236,823	+		GFF2343	0.12	+0.8
1,236,823	+		GFF2343	0.12	-0.8
1,236,824	-		GFF2343	0.12	+0.7
1,236,850	+		GFF2343	0.14	-0.3
1,236,850	+		GFF2343	0.14	+1.5
1,236,850	+		GFF2343	0.14	+0.2
1,236,850	+		GFF2343	0.14	+1.3
1,236,850	+		GFF2343	0.14	+0.2
1,236,850	+		GFF2343	0.14	-0.4
1,236,850	+		GFF2343	0.14	+0.0
1,236,850	+		GFF2343	0.14	-0.0
1,236,851	-		GFF2343	0.14	+0.0
1,236,851	-		GFF2343	0.14	+0.1
1,236,851	-		GFF2343	0.14	+0.2
1,236,851	-		GFF2343	0.14	-0.4
1,236,851	-		GFF2343	0.14	+0.3
1,236,856	+		GFF2343	0.14	+0.9
1,236,856	+		GFF2343	0.14	-0.4
1,236,856	+		GFF2343	0.14	+0.2
1,236,856	+		GFF2343	0.14	-0.3
1,236,856	+		GFF2343	0.14	+0.8
1,236,856	+		GFF2343	0.14	-0.4
1,236,856	+		GFF2343	0.14	+0.1
1,236,856	+		GFF2343	0.14	-0.1
1,236,856	+		GFF2343	0.14	-0.8
1,236,856	+		GFF2343	0.14	+0.5
1,236,856	+		GFF2343	0.14	+0.8
1,236,856	+		GFF2343	0.14	-1.0
1,236,857	-		GFF2343	0.15	-0.1
1,236,857	-		GFF2343	0.15	-1.3
1,236,857	-		GFF2343	0.15	-1.1
1,236,857	-		GFF2343	0.15	+0.5
1,237,029	-		GFF2343	0.26	+0.1
1,237,172	-		GFF2343	0.36	+0.2
1,237,172	-		GFF2343	0.36	-0.4
1,237,172	-		GFF2343	0.36	-0.5
1,237,390	+		GFF2343	0.51	-1.0
1,237,390	+		GFF2343	0.51	-1.5
1,237,391	-		GFF2343	0.51	-1.3
1,237,391	-		GFF2343	0.51	+0.3
1,237,391	-		GFF2343	0.51	-0.2
1,237,513	-		GFF2343	0.60	-0.0
1,237,546	+		GFF2343	0.62	-0.3
1,237,620	+		GFF2343	0.67	-0.3
1,237,663	+		GFF2343	0.70	+0.1
1,237,663	+		GFF2343	0.70	-0.9
1,237,664	-		GFF2343	0.70	+0.1
1,237,664	-		GFF2343	0.70	+0.1
1,237,664	-		GFF2343	0.70	+1.7
1,237,664	-		GFF2343	0.70	-1.1
1,237,664	-		GFF2343	0.70	-0.9
1,237,664	-		GFF2343	0.70	+0.7
1,237,684	+		GFF2343	0.72	-0.0
1,237,684	+		GFF2343	0.72	+0.3
1,237,685	-		GFF2343	0.72	-1.1
1,237,685	-		GFF2343	0.72	+0.6
1,237,732	+		GFF2343	0.75	+0.3
1,237,759	+		GFF2343	0.77	+0.1
1,237,759	+		GFF2343	0.77	-0.3
1,237,760	-		GFF2343	0.77	-0.5
1,237,760	-		GFF2343	0.77	-0.3
1,237,760	-		GFF2343	0.77	-0.3
1,237,812	+		GFF2343	0.80	+0.3
1,237,812	+		GFF2343	0.80	-0.7
1,237,813	-		GFF2343	0.81	-0.4
1,237,813	-		GFF2343	0.81	+0.7
1,237,932	+		GFF2343	0.89	+2.1
1,237,932	+		GFF2343	0.89	-0.5
1,237,932	+		GFF2343	0.89	-0.1
1,237,933	-		GFF2343	0.89	-0.2
1,237,933	-		GFF2343	0.89	+1.1
1,238,020	+				-0.1
1,238,020	+				+0.9
1,238,020	+				+0.7
1,238,020	+				-0.3
1,238,020	+				-0.1
1,238,020	+				-0.4
1,238,020	+				-0.2
1,238,021	-				-0.2
1,238,021	-				+0.6
1,238,021	-				+0.7
1,238,060	+				+1.1
1,238,061	-				+0.3
1,238,102	+				-0.5
1,238,103	-				+0.6
1,238,103	-				+0.1
1,238,189	+				-0.6
1,238,190	-				-0.0
1,238,190	-				+1.4
1,238,190	-				-0.1
1,238,190	-				-0.7
1,238,190	-				-0.4
1,238,220	+				+0.8
1,238,220	+				-0.2
1,238,220	+				-0.5
1,238,220	+				+0.1
1,238,220	+				+1.3
1,238,221	-				-0.4
1,238,221	-				-0.2
1,238,260	+				+0.2
1,238,260	+				+1.9
1,238,260	+				+1.1
1,238,261	-				-1.3
1,238,261	-				+0.0
1,238,261	-				+0.7
1,238,261	-				-1.3
1,238,279	+				-0.3
1,238,280	-				-0.5
1,238,324	+				+0.3
1,238,324	+				+0.1
1,238,325	-				+1.9
1,238,325	-				+0.1
1,238,325	-				-0.7
1,238,345	+				-0.4
1,238,346	-				-0.3
1,238,346	-				-0.5
1,238,411	+				-0.8
1,238,412	-				+1.1
1,238,412	-				+1.1
1,238,449	+				+0.3
1,238,450	-				-0.7
1,238,450	-				+0.3
1,238,487	+				-0.3
1,238,488	-				-0.9
1,238,488	-				-0.1
1,238,488	-				-0.4
1,238,600	+				-0.4
1,238,600	+				+1.1
1,238,600	+				-0.8
1,238,600	+				+0.4
1,238,600	+				+0.3
1,238,601	-				-0.1
1,238,601	-				+0.1
1,238,601	-				+1.7
1,238,601	-				-0.4
1,238,601	-				+0.6
1,238,601	-				-0.3
1,238,601	-				+1.1
1,238,601	-				+1.3
1,238,601	-				+0.3
1,238,601	-				-0.7
1,238,652	+				-0.4
1,238,652	+				-0.7
1,238,652	+				+0.7
1,238,652	+				+0.1
1,238,652	+				+0.3
1,238,652	+				-0.6
1,238,653	-				-0.1
1,238,653	-				-1.3
1,238,653	-				-0.3
1,238,653	-				-0.7
1,238,653	-				+0.3
1,238,653	-				-0.3
1,238,653	-				+0.1
1,238,653	-				-0.3
1,238,667	-				-0.4
1,238,678	+				+0.4
1,238,678	+				-0.0
1,238,679	-		GFF2344	0.10	-0.7
1,238,679	-		GFF2344	0.10	+0.2
1,238,679	-		GFF2344	0.10	+1.2
1,238,691	+		GFF2344	0.11	-0.2
1,238,692	-		GFF2344	0.11	-0.2
1,238,692	-		GFF2344	0.11	+0.5
1,238,692	-		GFF2344	0.11	-0.1
1,238,766	+		GFF2344	0.14	+0.3
1,238,766	+		GFF2344	0.14	-0.0
1,238,767	-		GFF2344	0.14	-0.3
1,238,767	-		GFF2344	0.14	-0.4
1,238,767	-		GFF2344	0.14	-0.5
1,238,767	-		GFF2344	0.14	+0.4
1,238,784	+		GFF2344	0.15	-0.1
1,238,784	+		GFF2344	0.15	+0.9
1,238,785	-		GFF2344	0.15	+0.1
1,238,884	+		GFF2344	0.19	+0.2
1,238,884	+		GFF2344	0.19	+0.5
1,238,884	+		GFF2344	0.19	-0.2
1,238,884	+		GFF2344	0.19	+0.8
1,238,884	+		GFF2344	0.19	+0.1
1,238,885	-		GFF2344	0.19	-1.5
1,238,885	-		GFF2344	0.19	+0.2
1,238,885	-		GFF2344	0.19	+0.3
1,238,885	-		GFF2344	0.19	+0.1
1,238,885	-		GFF2344	0.19	-0.0
1,238,885	-		GFF2344	0.19	+1.7
1,238,885	-		GFF2344	0.19	+1.3
1,238,885	-		GFF2344	0.19	+0.8
1,238,885	-		GFF2344	0.19	+1.1
1,238,885	-		GFF2344	0.19	-0.6
1,238,885	-		GFF2344	0.19	-0.7
1,238,885	-		GFF2344	0.19	-0.5
1,238,974	+		GFF2344	0.23	-0.7
1,238,974	+		GFF2344	0.23	+2.8
1,238,974	+		GFF2344	0.23	-0.1
1,238,974	+		GFF2344	0.23	-0.3
1,238,974	+		GFF2344	0.23	-0.1
1,238,974	+		GFF2344	0.23	+0.2
1,238,974	+		GFF2344	0.23	-0.3
1,238,974	+		GFF2344	0.23	-0.1
1,238,975	-		GFF2344	0.23	+0.2
1,238,975	-		GFF2344	0.23	-0.3
1,238,975	-		GFF2344	0.23	+0.3
1,238,975	-		GFF2344	0.23	+0.5
1,238,975	-		GFF2344	0.23	+0.1
1,238,999	+		GFF2344	0.24	-0.5
1,239,016	+		GFF2344	0.25	+0.6
1,239,016	+		GFF2344	0.25	+0.7
1,239,016	+		GFF2344	0.25	+1.1
1,239,016	+		GFF2344	0.25	-0.6
1,239,017	-		GFF2344	0.25	-0.5
1,239,017	-		GFF2344	0.25	-0.2
1,239,017	-		GFF2344	0.25	-0.2
1,239,039	+		GFF2344	0.26	-0.4
1,239,040	-		GFF2344	0.26	-0.4