Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2251

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,134,413	-		GFF2250	0.45	-1.1
1,134,605	+		GFF2250	0.59	+0.2
1,134,605	+		GFF2250	0.59	-0.7
1,134,606	-		GFF2250	0.59	+0.1
1,134,606	-		GFF2250	0.59	-0.9
1,134,629	+		GFF2250	0.61	+0.4
1,134,629	+		GFF2250	0.61	+1.1
1,134,629	+		GFF2250	0.61	-0.4
1,134,629	+		GFF2250	0.61	-0.4
1,134,629	+		GFF2250	0.61	+2.1
1,134,630	-		GFF2250	0.61	-0.3
1,134,821	+		GFF2250	0.75	-0.4
1,134,926	+		GFF2250	0.83	+0.1
1,134,926	+		GFF2250	0.83	-0.6
1,134,926	+		GFF2250	0.83	+1.5
1,134,927	-		GFF2250	0.83	+0.9
1,135,177	+				+0.4
1,135,178	-				-0.5
1,135,379	+		GFF2251	0.25	-1.0
1,135,379	+		GFF2251	0.25	-0.7
1,135,379	+		GFF2251	0.25	+0.1
1,135,380	-		GFF2251	0.26	-1.1
1,135,380	-		GFF2251	0.26	-0.9
1,135,380	-		GFF2251	0.26	-0.3
1,135,385	+		GFF2251	0.26	-1.7
1,135,385	+		GFF2251	0.26	-0.4
1,135,385	+		GFF2251	0.26	+0.1
1,135,385	+		GFF2251	0.26	-1.1
1,135,386	-		GFF2251	0.27	-0.3
1,135,433	+		GFF2251	0.34	+0.3
1,135,433	+		GFF2251	0.34	-0.7
1,135,433	+		GFF2251	0.34	-0.5
1,135,434	-		GFF2251	0.34	+0.5
1,135,527	-		GFF2251	0.48	+0.7
1,135,712	+		GFF2251	0.77	-0.0
1,135,712	+		GFF2251	0.77	-0.8
1,135,712	+		GFF2251	0.77	-0.5
1,135,712	+		GFF2251	0.77	-1.8
1,135,712	+		GFF2251	0.77	-0.5
1,135,712	+		GFF2251	0.77	-0.4
1,135,712	+		GFF2251	0.77	-1.7
1,135,713	-		GFF2251	0.77	+0.1
1,135,713	-		GFF2251	0.77	-0.4
1,135,713	-		GFF2251	0.77	-0.9
1,135,713	-		GFF2251	0.77	-0.3
1,135,736	+		GFF2251	0.81	+0.5
1,135,736	+		GFF2251	0.81	-0.5
1,135,736	+		GFF2251	0.81	-0.9
1,135,737	-		GFF2251	0.81	-1.0
1,135,814	+				-1.2
1,135,907	+				+0.7
1,135,907	+				-0.0
1,135,907	+				-1.5
1,135,908	-				+0.7
1,135,908	-				+0.2
1,135,908	-				+0.5
1,135,908	-				-0.1
1,136,419	+		GFF2252	0.45	+0.0
1,136,525	-		GFF2252	0.55	+0.3
1,136,525	-		GFF2252	0.55	+0.1
1,136,525	-		GFF2252	0.55	-0.0
1,136,573	-		GFF2252	0.60	+0.2
1,136,573	-		GFF2252	0.60	-0.5
1,136,591	-		GFF2252	0.61	-0.8
1,136,602	+		GFF2252	0.62	-0.1
1,136,602	+		GFF2252	0.62	-0.4
1,136,603	-		GFF2252	0.62	+0.1
1,136,603	-		GFF2252	0.62	+0.1