Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2076

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
961,844	+		GFF2075	0.60	-0.5
961,844	+		GFF2075	0.60	+0.0
961,844	+		GFF2075	0.60	-0.6
961,845	-		GFF2075	0.60	-0.3
962,018	+		GFF2075	0.73	-0.3
962,018	+		GFF2075	0.73	+0.2
962,019	-		GFF2075	0.73	+0.7
962,019	-		GFF2075	0.73	-0.3
962,036	+		GFF2075	0.74	+1.0
962,036	+		GFF2075	0.74	-0.3
962,036	+		GFF2075	0.74	-0.1
962,036	+		GFF2075	0.74	-0.0
962,037	-		GFF2075	0.75	-0.7
962,037	-		GFF2075	0.75	-1.6
962,037	-		GFF2075	0.75	-0.9
962,060	+		GFF2075	0.76	-0.4
962,060	+		GFF2075	0.76	-0.9
962,060	+		GFF2075	0.76	+0.4
962,060	+		GFF2075	0.76	-0.1
962,060	+		GFF2075	0.76	-0.7
962,061	-		GFF2075	0.76	-0.2
962,061	-		GFF2075	0.76	-0.5
962,138	+		GFF2075	0.82	+0.1
962,138	+		GFF2075	0.82	-1.5
962,138	+		GFF2075	0.82	-0.5
962,138	+		GFF2075	0.82	+0.3
962,138	+		GFF2075	0.82	-0.0
962,139	-		GFF2075	0.82	+1.1
962,139	-		GFF2075	0.82	-1.2
962,139	-		GFF2075	0.82	-0.3
962,139	-		GFF2075	0.82	+0.1
962,139	-		GFF2075	0.82	+0.2
962,139	-		GFF2075	0.82	-0.3
962,139	-		GFF2075	0.82	+0.5
962,147	+		GFF2075	0.83	+0.5
962,147	+		GFF2075	0.83	-2.7
962,147	+		GFF2075	0.83	+0.1
962,147	+		GFF2075	0.83	+0.1
962,148	-		GFF2075	0.83	-0.5
962,148	-		GFF2075	0.83	+0.7
962,148	-		GFF2075	0.83	-0.1
962,148	-		GFF2075	0.83	-0.5
962,148	-		GFF2075	0.83	+0.1
962,148	-		GFF2075	0.83	-0.1
962,386	+				-0.2
962,387	-				+1.1
962,387	-				-0.6
962,404	-				-0.1
962,463	+		GFF2076	0.17	+0.8
962,463	+		GFF2076	0.17	+0.1
962,463	+		GFF2076	0.17	-0.1
962,464	-		GFF2076	0.18	+0.2
962,464	-		GFF2076	0.18	+0.1
962,464	-		GFF2076	0.18	-0.4
962,464	-		GFF2076	0.18	-0.4
962,701	-		GFF2076	0.77	+0.7
962,728	-		GFF2076	0.83	-0.8
962,916	+				-0.3
962,972	+				-0.0
962,973	-				-0.2
962,973	-				-0.9
962,973	-				+1.5
962,973	-				-0.5
963,089	+				+0.9
963,091	+				+0.8
963,092	-				+0.4
963,203	+				+0.4
963,241	+				-0.3
963,241	+				+0.2
963,242	-				-0.5
963,242	-				+0.0
963,250	+				+0.8
963,250	+				-0.4
963,265	+				-0.4
963,265	+				+0.8
963,265	+				-1.9
963,265	+				+0.2
963,265	+				-0.1
963,265	+				-0.9
963,266	-				+0.8
963,266	-				-1.5
963,266	-				+1.1
963,266	-				-0.1
963,266	-				+1.1
963,345	+				-1.5
963,346	-				-1.1
963,419	-				+0.3
963,419	-				-0.1
963,436	+				-1.2
963,436	+				+0.7
963,436	+				-0.2
963,437	-				+1.5
963,437	-				+0.8
963,437	-				+0.1
963,437	-				-0.4
963,437	-				+0.4
963,437	-				+0.2
963,475	+		GFF2077	0.10	+0.2
963,475	+		GFF2077	0.10	-0.6
963,476	-		GFF2077	0.10	+0.1