Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1995 and GFF1996 overlap by 4 nucleotides GFF1996 and GFF1997 are separated by 29 nucleotides GFF1997 and GFF1998 are separated by 101 nucleotides
GFF1995 - Alkanesulfonates transport system permease protein, at 872,121 to 872,870
GFF1995
GFF1996 - Alkanesulfonates transport system permease protein, at 872,867 to 873,640
GFF1996
GFF1997 - Cyclase, at 873,670 to 874,476
GFF1997
GFF1998 - Fumarylacetoacetase (EC 3.7.1.2), at 874,578 to 875,900
GFF1998
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 873.700 kb on + strand at 873.700 kb on + strand at 873.700 kb on + strand at 873.700 kb on + strand at 873.700 kb on + strand at 873.700 kb on + strand at 873.701 kb on - strand at 873.701 kb on - strand at 873.701 kb on - strand at 873.895 kb on + strand, within GFF1997 at 873.895 kb on + strand, within GFF1997 at 874.024 kb on + strand, within GFF1997 at 874.025 kb on - strand, within GFF1997 at 874.168 kb on + strand, within GFF1997 at 874.169 kb on - strand, within GFF1997 at 874.169 kb on - strand, within GFF1997 at 874.169 kb on - strand, within GFF1997 at 874.183 kb on + strand, within GFF1997 at 874.183 kb on + strand, within GFF1997 at 874.183 kb on + strand, within GFF1997 at 874.184 kb on - strand, within GFF1997 at 874.184 kb on - strand, within GFF1997 at 874.184 kb on - strand, within GFF1997 at 874.184 kb on - strand, within GFF1997 at 874.264 kb on + strand, within GFF1997 at 874.475 kb on - strand at 874.475 kb on - strand at 874.986 kb on + strand, within GFF1998 at 874.986 kb on + strand, within GFF1998 at 874.986 kb on + strand, within GFF1998 at 874.987 kb on - strand, within GFF1998 at 874.998 kb on + strand, within GFF1998 at 874.998 kb on + strand, within GFF1998 at 874.998 kb on + strand, within GFF1998 at 874.998 kb on + strand, within GFF1998 at 874.998 kb on + strand, within GFF1998 at 874.999 kb on - strand, within GFF1998 at 874.999 kb on - strand, within GFF1998 at 874.999 kb on - strand, within GFF1998 at 875.088 kb on + strand, within GFF1998 at 875.088 kb on + strand, within GFF1998 at 875.181 kb on + strand, within GFF1998 at 875.181 kb on + strand, within GFF1998 at 875.181 kb on + strand, within GFF1998 at 875.182 kb on - strand, within GFF1998 at 875.205 kb on + strand, within GFF1998 at 875.205 kb on + strand, within GFF1998 at 875.206 kb on - strand, within GFF1998 at 875.206 kb on - strand, within GFF1998 at 875.226 kb on + strand, within GFF1998 at 875.226 kb on + strand, within GFF1998 at 875.226 kb on + strand, within GFF1998 at 875.227 kb on - strand, within GFF1998 at 875.475 kb on + strand, within GFF1998
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 873,700 + -0.9 873,700 + +1.0 873,700 + +0.4 873,700 + -0.1 873,700 + +0.9 873,700 + +0.3 873,701 - -0.0 873,701 - -0.2 873,701 - -0.1 873,895 + GFF1997 0.28 -0.1 873,895 + GFF1997 0.28 -2.5 874,024 + GFF1997 0.44 +1.0 874,025 - GFF1997 0.44 +1.1 874,168 + GFF1997 0.62 +0.7 874,169 - GFF1997 0.62 +0.0 874,169 - GFF1997 0.62 +0.2 874,169 - GFF1997 0.62 -1.2 874,183 + GFF1997 0.64 +0.0 874,183 + GFF1997 0.64 +0.1 874,183 + GFF1997 0.64 -0.0 874,184 - GFF1997 0.64 +0.7 874,184 - GFF1997 0.64 -0.4 874,184 - GFF1997 0.64 +0.0 874,184 - GFF1997 0.64 -0.3 874,264 + GFF1997 0.74 -0.1 874,475 - -1.6 874,475 - -0.0 874,986 + GFF1998 0.31 +0.0 874,986 + GFF1998 0.31 -0.1 874,986 + GFF1998 0.31 -0.2 874,987 - GFF1998 0.31 -0.0 874,998 + GFF1998 0.32 -0.1 874,998 + GFF1998 0.32 -0.2 874,998 + GFF1998 0.32 -1.0 874,998 + GFF1998 0.32 -0.9 874,998 + GFF1998 0.32 -0.7 874,999 - GFF1998 0.32 -0.0 874,999 - GFF1998 0.32 +1.4 874,999 - GFF1998 0.32 +0.8 875,088 + GFF1998 0.39 -1.7 875,088 + GFF1998 0.39 +0.7 875,181 + GFF1998 0.46 +0.3 875,181 + GFF1998 0.46 +1.9 875,181 + GFF1998 0.46 -0.3 875,182 - GFF1998 0.46 -0.1 875,205 + GFF1998 0.47 -0.9 875,205 + GFF1998 0.47 +0.1 875,206 - GFF1998 0.47 -0.9 875,206 - GFF1998 0.47 -0.1 875,226 + GFF1998 0.49 +0.3 875,226 + GFF1998 0.49 +0.3 875,226 + GFF1998 0.49 +0.1 875,227 - GFF1998 0.49 -1.0 875,475 + GFF1998 0.68 +1.5
Or see this region's nucleotide sequence