Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1935 and GFF1936 are separated by 111 nucleotides GFF1936 and GFF1937 overlap by 17 nucleotides GFF1937 and GFF1938 are separated by 25 nucleotides
GFF1935 - hypothetical protein, at 810,487 to 810,888
GFF1935
GFF1936 - Type III restriction-modification enzyme, helicase subunit, at 811,000 to 811,746
GFF1936
GFF1937 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 811,730 to 812,770
GFF1937
GFF1938 - Transcriptional regulator, LysR family, at 812,796 to 813,701
GFF1938
Position (kb) 811
812
813 Strain fitness (log2 ratio) -1
0
1 at 810.900 kb on + strand at 810.901 kb on - strand at 810.901 kb on - strand at 811.912 kb on - strand, within GFF1937 at 811.912 kb on - strand, within GFF1937 at 811.959 kb on + strand, within GFF1937 at 811.959 kb on + strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 812.037 kb on + strand, within GFF1937 at 812.037 kb on + strand, within GFF1937 at 812.340 kb on + strand, within GFF1937 at 812.770 kb on + strand at 812.785 kb on + strand at 812.785 kb on + strand at 812.968 kb on + strand, within GFF1938 at 812.968 kb on + strand, within GFF1938 at 812.969 kb on - strand, within GFF1938 at 813.179 kb on - strand, within GFF1938 at 813.179 kb on - strand, within GFF1938 at 813.496 kb on + strand, within GFF1938 at 813.497 kb on - strand, within GFF1938 at 813.608 kb on + strand, within GFF1938
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 810,900 + +0.6 810,901 - +0.1 810,901 - +0.5 811,912 - GFF1937 0.17 -0.3 811,912 - GFF1937 0.17 +0.6 811,959 + GFF1937 0.22 +0.9 811,959 + GFF1937 0.22 -0.0 811,960 - GFF1937 0.22 -0.1 811,960 - GFF1937 0.22 -0.3 811,960 - GFF1937 0.22 -0.6 811,960 - GFF1937 0.22 -0.8 812,037 + GFF1937 0.29 +0.3 812,037 + GFF1937 0.29 -0.2 812,340 + GFF1937 0.59 -0.0 812,770 + +0.6 812,785 + +0.3 812,785 + -0.2 812,968 + GFF1938 0.19 -0.2 812,968 + GFF1938 0.19 -0.1 812,969 - GFF1938 0.19 +0.2 813,179 - GFF1938 0.42 +0.5 813,179 - GFF1938 0.42 +0.2 813,496 + GFF1938 0.77 -0.4 813,497 - GFF1938 0.77 -1.2 813,608 + GFF1938 0.90 -0.0
Or see this region's nucleotide sequence