Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF18 and GFF19 are separated by 15 nucleotides GFF19 and GFF20 are separated by 12 nucleotides
GFF18 - Sodium/bile acid symporter family, at 13,706 to 14,725
GFF18
GFF19 - Tricarboxylate transport protein TctC, at 14,741 to 15,709
GFF19
GFF20 - Membrane carboxypeptidase (penicillin-binding protein), at 15,722 to 18,784
GFF20
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1 at 13.745 kb on + strand at 13.745 kb on + strand at 13.745 kb on + strand at 13.746 kb on - strand at 14.018 kb on + strand, within GFF18 at 14.018 kb on + strand, within GFF18 at 14.337 kb on - strand, within GFF18 at 14.337 kb on - strand, within GFF18 at 14.652 kb on - strand at 15.062 kb on + strand, within GFF19 at 15.063 kb on - strand, within GFF19 at 15.063 kb on - strand, within GFF19 at 15.171 kb on - strand, within GFF19 at 15.225 kb on - strand, within GFF19 at 15.284 kb on + strand, within GFF19 at 15.284 kb on + strand, within GFF19 at 15.285 kb on - strand, within GFF19 at 15.285 kb on - strand, within GFF19 at 15.310 kb on - strand, within GFF19 at 15.707 kb on + strand at 15.855 kb on + strand at 15.892 kb on - strand at 15.892 kb on - strand at 16.360 kb on - strand, within GFF20 at 16.360 kb on - strand, within GFF20 at 16.360 kb on - strand, within GFF20 at 16.410 kb on + strand, within GFF20 at 16.411 kb on - strand, within GFF20 at 16.524 kb on + strand, within GFF20 at 16.525 kb on - strand, within GFF20 at 16.570 kb on - strand, within GFF20 at 16.570 kb on - strand, within GFF20
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 13,745 + +1.0 13,745 + +1.0 13,745 + +0.1 13,746 - -0.0 14,018 + GFF18 0.31 +0.3 14,018 + GFF18 0.31 +0.1 14,337 - GFF18 0.62 -0.3 14,337 - GFF18 0.62 +1.1 14,652 - +0.0 15,062 + GFF19 0.33 -0.0 15,063 - GFF19 0.33 -0.7 15,063 - GFF19 0.33 -1.0 15,171 - GFF19 0.44 -0.3 15,225 - GFF19 0.50 +0.4 15,284 + GFF19 0.56 -0.2 15,284 + GFF19 0.56 +0.5 15,285 - GFF19 0.56 -0.4 15,285 - GFF19 0.56 +0.0 15,310 - GFF19 0.59 -0.2 15,707 + -0.1 15,855 + -0.3 15,892 - -0.7 15,892 - +0.6 16,360 - GFF20 0.21 +0.7 16,360 - GFF20 0.21 +1.0 16,360 - GFF20 0.21 -0.2 16,410 + GFF20 0.22 -0.9 16,411 - GFF20 0.22 +0.0 16,524 + GFF20 0.26 -0.5 16,525 - GFF20 0.26 -0.2 16,570 - GFF20 0.28 +0.3 16,570 - GFF20 0.28 -0.1
Or see this region's nucleotide sequence