Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1709 and GFF1710 are separated by 18 nucleotides GFF1710 and GFF1711 are separated by 35 nucleotides GFF1711 and GFF1712 are separated by 8 nucleotides GFF1712 and GFF1713 are separated by 17 nucleotides
GFF1709 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 563,977 to 564,885
GFF1709
GFF1710 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 564,904 to 565,824
GFF1710
GFF1711 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 565,860 to 567,878
GFF1711
GFF1712 - Probable transmembrane protein, at 567,887 to 568,507
GFF1712
GFF1713 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 568,525 to 569,316
GFF1713
Position (kb) 565
566
567
568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 564.909 kb on - strand at 564.909 kb on - strand at 565.181 kb on + strand, within GFF1710 at 565.181 kb on + strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.182 kb on - strand, within GFF1710 at 565.460 kb on + strand, within GFF1710 at 565.493 kb on + strand, within GFF1710 at 565.493 kb on + strand, within GFF1710 at 565.494 kb on - strand, within GFF1710 at 565.494 kb on - strand, within GFF1710 at 565.494 kb on - strand, within GFF1710 at 565.538 kb on + strand, within GFF1710 at 565.538 kb on + strand, within GFF1710 at 565.538 kb on + strand, within GFF1710 at 565.538 kb on + strand, within GFF1710 at 565.539 kb on - strand, within GFF1710 at 565.539 kb on - strand, within GFF1710 at 565.539 kb on - strand, within GFF1710 at 565.539 kb on - strand, within GFF1710 at 565.836 kb on - strand at 565.836 kb on - strand at 565.918 kb on + strand at 565.919 kb on - strand at 565.919 kb on - strand at 565.919 kb on - strand at 566.308 kb on + strand, within GFF1711 at 566.308 kb on + strand, within GFF1711 at 566.308 kb on + strand, within GFF1711 at 566.308 kb on + strand, within GFF1711 at 566.309 kb on - strand, within GFF1711 at 566.309 kb on - strand, within GFF1711 at 566.309 kb on - strand, within GFF1711 at 566.309 kb on - strand, within GFF1711 at 566.309 kb on - strand, within GFF1711 at 566.341 kb on + strand, within GFF1711 at 566.342 kb on - strand, within GFF1711 at 566.695 kb on + strand, within GFF1711 at 566.695 kb on + strand, within GFF1711 at 566.695 kb on + strand, within GFF1711 at 566.696 kb on - strand, within GFF1711 at 566.782 kb on + strand, within GFF1711 at 567.001 kb on + strand, within GFF1711 at 567.001 kb on + strand, within GFF1711 at 567.002 kb on - strand, within GFF1711 at 567.002 kb on - strand, within GFF1711 at 567.028 kb on + strand, within GFF1711 at 567.028 kb on + strand, within GFF1711 at 567.029 kb on - strand, within GFF1711 at 567.029 kb on - strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.211 kb on + strand, within GFF1711 at 567.211 kb on + strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.275 kb on - strand, within GFF1711 at 567.700 kb on + strand at 567.700 kb on + strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.785 kb on - strand at 567.785 kb on - strand at 567.785 kb on - strand at 567.888 kb on + strand at 567.889 kb on - strand at 567.889 kb on - strand at 567.889 kb on - strand at 567.889 kb on - strand at 568.422 kb on + strand, within GFF1712 at 568.422 kb on + strand, within GFF1712 at 568.422 kb on + strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.832 kb on + strand, within GFF1713 at 568.832 kb on + strand, within GFF1713 at 568.832 kb on + strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 564,909 - -0.5 564,909 - -0.5 565,181 + GFF1710 0.30 -0.2 565,181 + GFF1710 0.30 +0.6 565,182 - GFF1710 0.30 -1.0 565,182 - GFF1710 0.30 +0.1 565,182 - GFF1710 0.30 -0.9 565,182 - GFF1710 0.30 -1.1 565,182 - GFF1710 0.30 -0.2 565,182 - GFF1710 0.30 +0.3 565,182 - GFF1710 0.30 +0.3 565,182 - GFF1710 0.30 -0.8 565,182 - GFF1710 0.30 -0.9 565,182 - GFF1710 0.30 +0.8 565,182 - GFF1710 0.30 -0.9 565,460 + GFF1710 0.60 -0.2 565,493 + GFF1710 0.64 +0.9 565,493 + GFF1710 0.64 +1.1 565,494 - GFF1710 0.64 +0.4 565,494 - GFF1710 0.64 -0.9 565,494 - GFF1710 0.64 -0.8 565,538 + GFF1710 0.69 +0.8 565,538 + GFF1710 0.69 -0.1 565,538 + GFF1710 0.69 +2.1 565,538 + GFF1710 0.69 -0.3 565,539 - GFF1710 0.69 +0.1 565,539 - GFF1710 0.69 -0.3 565,539 - GFF1710 0.69 -0.3 565,539 - GFF1710 0.69 -0.3 565,836 - -0.2 565,836 - +1.9 565,918 + -1.9 565,919 - -2.2 565,919 - -0.5 565,919 - -1.2 566,308 + GFF1711 0.22 -1.6 566,308 + GFF1711 0.22 -0.6 566,308 + GFF1711 0.22 -0.6 566,308 + GFF1711 0.22 +0.2 566,309 - GFF1711 0.22 -1.0 566,309 - GFF1711 0.22 -2.1 566,309 - GFF1711 0.22 -2.1 566,309 - GFF1711 0.22 -0.7 566,309 - GFF1711 0.22 -0.6 566,341 + GFF1711 0.24 -2.1 566,342 - GFF1711 0.24 -1.3 566,695 + GFF1711 0.41 -2.5 566,695 + GFF1711 0.41 -1.4 566,695 + GFF1711 0.41 -0.7 566,696 - GFF1711 0.41 -0.2 566,782 + GFF1711 0.46 -0.4 567,001 + GFF1711 0.57 -1.3 567,001 + GFF1711 0.57 -1.5 567,002 - GFF1711 0.57 -1.2 567,002 - GFF1711 0.57 +1.7 567,028 + GFF1711 0.58 -0.9 567,028 + GFF1711 0.58 -1.0 567,029 - GFF1711 0.58 +0.9 567,029 - GFF1711 0.58 -1.9 567,076 + GFF1711 0.60 -1.1 567,076 + GFF1711 0.60 -0.7 567,076 + GFF1711 0.60 -0.9 567,076 + GFF1711 0.60 -0.2 567,076 + GFF1711 0.60 -0.8 567,076 + GFF1711 0.60 +0.7 567,076 + GFF1711 0.60 +0.3 567,076 + GFF1711 0.60 +1.2 567,076 + GFF1711 0.60 +0.6 567,076 + GFF1711 0.60 +1.1 567,077 - GFF1711 0.60 -1.0 567,077 - GFF1711 0.60 -0.8 567,077 - GFF1711 0.60 -0.8 567,211 + GFF1711 0.67 +0.3 567,211 + GFF1711 0.67 -2.4 567,212 - GFF1711 0.67 -0.8 567,212 - GFF1711 0.67 -1.6 567,212 - GFF1711 0.67 -1.3 567,274 + GFF1711 0.70 -0.8 567,274 + GFF1711 0.70 -1.1 567,274 + GFF1711 0.70 -1.4 567,275 - GFF1711 0.70 +0.8 567,700 + -1.3 567,700 + -0.6 567,701 - -1.1 567,701 - +0.1 567,701 - +1.1 567,701 - -0.9 567,785 - -1.2 567,785 - -1.5 567,785 - -0.2 567,888 + -1.9 567,889 - +0.4 567,889 - -0.3 567,889 - -0.3 567,889 - -0.4 568,422 + GFF1712 0.86 -0.1 568,422 + GFF1712 0.86 +0.0 568,422 + GFF1712 0.86 +0.2 568,423 - GFF1712 0.86 +0.8 568,423 - GFF1712 0.86 +0.1 568,423 - GFF1712 0.86 +0.5 568,423 - GFF1712 0.86 +0.5 568,423 - GFF1712 0.86 -0.0 568,832 + GFF1713 0.39 +0.7 568,832 + GFF1713 0.39 -0.3 568,832 + GFF1713 0.39 +0.1 568,833 - GFF1713 0.39 -0.5 568,833 - GFF1713 0.39 +0.1 568,833 - GFF1713 0.39 +2.1 568,833 - GFF1713 0.39 -0.6 568,833 - GFF1713 0.39 -0.5 568,833 - GFF1713 0.39 +1.5 568,872 - GFF1713 0.44 +0.6 568,872 - GFF1713 0.44 -0.3 568,872 - GFF1713 0.44 -0.5 568,872 - GFF1713 0.44 -1.6 568,872 - GFF1713 0.44 -0.4
Or see this region's nucleotide sequence