Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1691 and GFF1692 overlap by 4 nucleotides GFF1692 and GFF1693 are separated by 15 nucleotides GFF1693 and GFF1694 are separated by 109 nucleotides
GFF1691 - Rare lipoprotein A precursor, at 541,813 to 542,247
GFF1691
GFF1692 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 542,244 to 543,074
GFF1692
GFF1693 - RNA binding methyltransferase FtsJ like, at 543,090 to 543,842
GFF1693
GFF1694 - Adenosylhomocysteinase (EC 3.3.1.1), at 543,952 to 545,403
GFF1694
Position (kb) 543
544 Strain fitness (log2 ratio) -1
0
1 at 542.302 kb on + strand at 542.303 kb on - strand at 543.103 kb on + strand at 543.103 kb on + strand at 543.104 kb on - strand at 543.154 kb on + strand at 543.155 kb on - strand at 543.217 kb on + strand, within GFF1693 at 543.217 kb on + strand, within GFF1693 at 543.218 kb on - strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.956 kb on + strand at 543.956 kb on + strand at 543.957 kb on - strand at 543.962 kb on + strand at 543.963 kb on - strand at 543.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 542,302 + +1.1 542,303 - -1.5 543,103 + -0.6 543,103 + +1.4 543,104 - -0.4 543,154 + -0.4 543,155 - -0.0 543,217 + GFF1693 0.17 +0.1 543,217 + GFF1693 0.17 +0.1 543,218 - GFF1693 0.17 +0.7 543,658 + GFF1693 0.75 -0.3 543,658 + GFF1693 0.75 +0.1 543,658 + GFF1693 0.75 +0.7 543,658 + GFF1693 0.75 +1.1 543,658 + GFF1693 0.75 -0.2 543,658 + GFF1693 0.75 +0.0 543,956 + -1.3 543,956 + -1.7 543,957 - -0.9 543,962 + -1.3 543,963 - -1.5 543,963 - -0.5
Or see this region's nucleotide sequence