Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1651 and GFF1652 are separated by 7 nucleotides GFF1652 and GFF1653 are separated by 20 nucleotides GFF1653 and GFF1654 are separated by 70 nucleotides GFF1654 and GFF1655 overlap by 4 nucleotides
GFF1651 - Ureidoglycolate hydrolase (EC 3.5.3.19), at 505,349 to 505,849
GFF1651
GFF1652 - similar to protocatechuate 4,5-dioxygenase beta chain, at 505,857 to 506,702
GFF1652
GFF1653 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 506,723 to 507,073
GFF1653
GFF1654 - Transcriptional regulator, LysR family, at 507,144 to 508,061
GFF1654
GFF1655 - hypothetical protein, at 508,058 to 508,735
GFF1655
Position (kb) 506
507
508 Strain fitness (log2 ratio) -1
0
1 at 505.912 kb on + strand at 505.912 kb on + strand at 505.913 kb on - strand at 506.215 kb on + strand, within GFF1652 at 506.467 kb on + strand, within GFF1652 at 506.537 kb on - strand, within GFF1652 at 506.838 kb on + strand, within GFF1653 at 506.838 kb on + strand, within GFF1653 at 506.839 kb on - strand, within GFF1653 at 506.841 kb on + strand, within GFF1653 at 506.842 kb on - strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 507.133 kb on + strand at 507.151 kb on + strand at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.756 kb on + strand, within GFF1654 at 507.757 kb on - strand, within GFF1654 at 507.972 kb on + strand at 507.973 kb on - strand at 508.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 505,912 + +0.5 505,912 + +0.1 505,913 - -0.3 506,215 + GFF1652 0.42 +0.2 506,467 + GFF1652 0.72 +0.3 506,537 - GFF1652 0.80 -0.3 506,838 + GFF1653 0.33 +0.8 506,838 + GFF1653 0.33 +0.3 506,839 - GFF1653 0.33 -0.2 506,841 + GFF1653 0.34 -0.3 506,842 - GFF1653 0.34 -1.3 506,931 + GFF1653 0.59 -0.5 506,931 + GFF1653 0.59 +0.3 506,932 - GFF1653 0.60 +0.6 506,932 - GFF1653 0.60 +0.8 506,932 - GFF1653 0.60 -0.5 506,932 - GFF1653 0.60 -0.6 507,133 + +0.1 507,151 + +0.2 507,684 + GFF1654 0.59 -0.3 507,684 + GFF1654 0.59 -0.0 507,684 + GFF1654 0.59 +0.1 507,684 + GFF1654 0.59 +0.5 507,684 + GFF1654 0.59 +1.1 507,685 - GFF1654 0.59 -0.0 507,685 - GFF1654 0.59 +0.1 507,756 + GFF1654 0.67 -0.2 507,757 - GFF1654 0.67 -0.4 507,972 + +0.1 507,973 - +0.8 508,059 + +0.0
Or see this region's nucleotide sequence