Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1644

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
498,511	-		GFF1643	0.39	+0.8
498,541	-		GFF1643	0.41	-1.1
498,565	-		GFF1643	0.43	-0.4
498,658	-		GFF1643	0.50	+0.2
498,744	+		GFF1643	0.56	-0.3
498,745	-		GFF1643	0.56	-0.3
498,900	+		GFF1643	0.67	-0.2
499,005	+		GFF1643	0.74	-0.1
499,317	+				+0.3
499,318	-				-0.5
499,549	+		GFF1644	0.18	-1.8
499,550	-		GFF1644	0.18	-0.8
499,570	+		GFF1644	0.20	-0.3
499,570	+		GFF1644	0.20	+0.1
499,570	+		GFF1644	0.20	-0.3
499,862	-		GFF1644	0.51	+0.2
499,894	+		GFF1644	0.55	-1.4
500,285	-				+0.9
500,285	-				-0.2
500,355	+				-0.2
500,400	+				-0.2
500,401	-				-0.0
500,402	+				+0.4
500,413	+				-0.4
500,413	+				+0.1
500,450	-				+1.5
500,450	-				+0.7
500,464	+				+0.1
500,482	+				+0.9
500,483	-				+1.5
500,949	-		GFF1645	0.30	+0.1
500,966	+		GFF1645	0.31	-0.7
500,966	+		GFF1645	0.31	-0.0