Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1544

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
397,932	+		GFF1543	0.52	+0.4
398,025	+		GFF1543	0.62	+0.1
398,026	-		GFF1543	0.62	+0.7
398,026	-		GFF1543	0.62	+0.7
398,073	+		GFF1543	0.68	-1.2
398,283	+				+0.0
398,283	+				+0.6
398,283	+				-0.7
398,316	+				-1.1
398,442	+				+0.1
398,442	+				+1.0
398,443	-				+0.8
398,443	-				+0.0
398,667	+		GFF1544	0.15	-0.1
398,667	+		GFF1544	0.15	-0.4
398,667	+		GFF1544	0.15	-0.2
398,667	+		GFF1544	0.15	-0.1
398,667	+		GFF1544	0.15	+0.0
398,668	-		GFF1544	0.15	-0.6
398,668	-		GFF1544	0.15	-3.3
398,668	-		GFF1544	0.15	-1.0
398,668	-		GFF1544	0.15	-1.6
398,802	+		GFF1544	0.28	-1.0
398,802	+		GFF1544	0.28	-2.5
399,159	+		GFF1544	0.62	-1.0
399,160	-		GFF1544	0.62	-2.5
399,675	-				+1.0
399,690	-				-0.3
400,136	+		GFF1545	0.41	+1.3