Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1476 and GFF1477 are separated by 80 nucleotides GFF1477 and GFF1478 overlap by 14 nucleotides GFF1478 and GFF1479 are separated by 11 nucleotides
GFF1476 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 325,424 to 327,556
GFF1476
GFF1477 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 327,637 to 328,497
GFF1477
GFF1478 - Chemotaxis protein CheD, at 328,484 to 329,140
GFF1478
GFF1479 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 329,152 to 330,252
GFF1479
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.186 kb on - strand, within GFF1476 at 327.186 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.324 kb on + strand, within GFF1476 at 327.324 kb on + strand, within GFF1476 at 327.455 kb on + strand at 327.456 kb on - strand at 327.456 kb on - strand at 327.800 kb on - strand, within GFF1477 at 327.800 kb on - strand, within GFF1477 at 327.854 kb on - strand, within GFF1477 at 328.039 kb on + strand, within GFF1477 at 328.147 kb on + strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.345 kb on + strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.483 kb on + strand at 328.483 kb on + strand at 328.484 kb on - strand at 328.484 kb on - strand at 328.484 kb on - strand at 328.587 kb on - strand, within GFF1478 at 328.587 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.640 kb on + strand, within GFF1478 at 328.641 kb on - strand, within GFF1478 at 328.787 kb on + strand, within GFF1478 at 328.935 kb on - strand, within GFF1478 at 329.003 kb on + strand, within GFF1478 at 329.138 kb on + strand at 329.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 327,185 + GFF1476 0.83 -0.8 327,185 + GFF1476 0.83 +0.0 327,185 + GFF1476 0.83 +0.0 327,185 + GFF1476 0.83 -0.8 327,186 - GFF1476 0.83 -0.1 327,186 - GFF1476 0.83 +1.0 327,288 - GFF1476 0.87 -1.3 327,288 - GFF1476 0.87 -0.6 327,288 - GFF1476 0.87 -0.3 327,288 - GFF1476 0.87 -0.5 327,324 + GFF1476 0.89 +0.4 327,324 + GFF1476 0.89 +0.1 327,455 + +2.0 327,456 - -0.3 327,456 - +0.5 327,800 - GFF1477 0.19 -0.1 327,800 - GFF1477 0.19 -0.3 327,854 - GFF1477 0.25 +0.6 328,039 + GFF1477 0.47 +1.1 328,147 + GFF1477 0.59 -0.2 328,148 - GFF1477 0.59 -0.4 328,148 - GFF1477 0.59 -0.6 328,148 - GFF1477 0.59 +1.3 328,345 + GFF1477 0.82 -0.5 328,346 - GFF1477 0.82 +1.3 328,346 - GFF1477 0.82 +0.0 328,483 + -0.2 328,483 + -1.8 328,484 - +0.7 328,484 - -0.1 328,484 - -0.1 328,587 - GFF1478 0.16 +0.0 328,587 - GFF1478 0.16 -0.8 328,638 - GFF1478 0.23 -0.6 328,638 - GFF1478 0.23 -0.3 328,638 - GFF1478 0.23 -0.1 328,640 + GFF1478 0.24 -0.4 328,641 - GFF1478 0.24 -0.4 328,787 + GFF1478 0.46 +0.5 328,935 - GFF1478 0.69 +0.5 329,003 + GFF1478 0.79 +0.6 329,138 + +0.6 329,138 + +0.0
Or see this region's nucleotide sequence