Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1406 and GFF1407 are separated by 13 nucleotides GFF1407 and GFF1408 are separated by 2 nucleotides GFF1408 and GFF1409 are separated by 82 nucleotides GFF1409 and GFF1410 are separated by 9 nucleotides
GFF1406 - Flagellar hook-associated protein FlgK, at 267,528 to 269,441
GFF1406
GFF1407 - Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-), at 269,455 to 270,315
GFF1407
GFF1408 - Flagellar P-ring protein FlgI, at 270,318 to 271,406
GFF1408
GFF1409 - Flagellar L-ring protein FlgH, at 271,489 to 272,184
GFF1409
GFF1410 - Flagellar basal-body rod protein FlgG, at 272,194 to 272,976
GFF1410
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1 at 269.345 kb on - strand at 269.705 kb on + strand, within GFF1407 at 269.706 kb on - strand, within GFF1407 at 269.706 kb on - strand, within GFF1407 at 271.222 kb on + strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.246 kb on + strand, within GFF1408 at 271.246 kb on + strand, within GFF1408 at 271.247 kb on - strand, within GFF1408 at 271.247 kb on - strand, within GFF1408 at 272.004 kb on - strand, within GFF1409 at 272.078 kb on + strand, within GFF1409 at 272.259 kb on - strand at 272.324 kb on + strand, within GFF1410 at 272.324 kb on + strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.397 kb on - strand, within GFF1410
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 269,345 - +0.9 269,705 + GFF1407 0.29 +1.0 269,706 - GFF1407 0.29 +0.2 269,706 - GFF1407 0.29 +0.1 271,222 + GFF1408 0.83 +1.2 271,223 - GFF1408 0.83 -0.2 271,223 - GFF1408 0.83 +0.4 271,223 - GFF1408 0.83 +0.2 271,246 + GFF1408 0.85 +0.1 271,246 + GFF1408 0.85 +0.7 271,247 - GFF1408 0.85 +0.0 271,247 - GFF1408 0.85 -0.7 272,004 - GFF1409 0.74 +0.1 272,078 + GFF1409 0.85 +1.5 272,259 - -0.3 272,324 + GFF1410 0.17 +0.4 272,324 + GFF1410 0.17 +0.5 272,325 - GFF1410 0.17 +0.4 272,325 - GFF1410 0.17 +0.7 272,397 - GFF1410 0.26 -0.6
Or see this region's nucleotide sequence