Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1371

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1370 and GFF1371 are separated by 63 nucleotidesGFF1371 and GFF1372 overlap by 147 nucleotidesGFF1372 and GFF1373 are separated by 81 nucleotides GFF1370 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 226,700 to 227,680 GFF1370 GFF1371 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 227,744 to 229,315 GFF1371 GFF1372 - hypothetical protein, at 229,169 to 229,333 GFF1372 GFF1373 - hypothetical protein, at 229,415 to 229,948 GFF1373 Position (kb) 227 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2 3at 226.749 kb on + strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.774 kb on + strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.238 kb on - strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.595 kb on + strandat 227.595 kb on + strandat 227.595 kb on + strandat 227.596 kb on - strandat 227.596 kb on - strandat 227.750 kb on + strandat 227.750 kb on + strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.965 kb on - strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 228.030 kb on + strand, within GFF1371at 228.030 kb on + strand, within GFF1371at 228.031 kb on - strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.105 kb on + strand, within GFF1371at 228.106 kb on - strand, within GFF1371at 228.106 kb on - strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.199 kb on - strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.652 kb on - strand, within GFF1371at 228.652 kb on - strand, within GFF1371at 228.652 kb on - strand, within GFF1371at 228.957 kb on + strand, within GFF1371at 228.957 kb on + strand, within GFF1371at 228.957 kb on + strand, within GFF1371at 228.957 kb on + strand, within GFF1371at 228.957 kb on + strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 228.958 kb on - strand, within GFF1371at 229.140 kb on + strand, within GFF1371at 229.140 kb on + strand, within GFF1371at 229.140 kb on + strand, within GFF1371at 229.140 kb on + strand, within GFF1371at 229.141 kb on - strand, within GFF1371at 229.141 kb on - strand, within GFF1371at 229.141 kb on - strand, within GFF1371at 229.143 kb on + strand, within GFF1371at 229.143 kb on + strand, within GFF1371at 229.143 kb on + strand, within GFF1371at 229.144 kb on - strand, within GFF1371at 229.158 kb on + strandat 229.158 kb on + strandat 229.158 kb on + strandat 229.158 kb on + strandat 229.158 kb on + strandat 229.159 kb on - strandat 229.327 kb on + strandat 229.327 kb on + strandat 229.327 kb on + strandat 229.327 kb on + strandat 229.328 kb on - strandat 229.328 kb on - strandat 229.328 kb on - strandat 229.328 kb on - strandat 229.332 kb on - strandat 229.332 kb on - strandat 229.332 kb on - strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.351 kb on + strandat 229.352 kb on - strandat 229.352 kb on - strandat 229.352 kb on - strandat 229.352 kb on - strandat 229.352 kb on - strandat 229.449 kb on + strandat 229.449 kb on + strandat 229.449 kb on + strandat 229.450 kb on - strandat 229.450 kb on - strandat 229.450 kb on - strandat 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.680 kb on + strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.681 kb on - strand, within GFF1373at 229.695 kb on + strand, within GFF1373at 229.695 kb on + strand, within GFF1373at 229.695 kb on + strand, within GFF1373at 229.696 kb on - strand, within GFF1373at 229.696 kb on - strand, within GFF1373at 229.696 kb on - strand, within GFF1373at 229.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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226,749 + +1.8
226,750 - -0.5
226,750 - +0.3
226,750 - +0.4
226,774 + +0.8
226,775 - -0.4
226,775 - +0.1
226,775 - +0.3
226,806 + GFF1370 0.11 +0.3
226,806 + GFF1370 0.11 +0.7
226,806 + GFF1370 0.11 +0.5
226,806 + GFF1370 0.11 +0.2
226,806 + GFF1370 0.11 +0.3
226,807 - GFF1370 0.11 +0.2
226,807 - GFF1370 0.11 +0.3
227,025 + GFF1370 0.33 -0.4
227,025 + GFF1370 0.33 +0.0
227,025 + GFF1370 0.33 +0.5
227,025 + GFF1370 0.33 -0.1
227,026 - GFF1370 0.33 -0.2
227,026 - GFF1370 0.33 -1.5
227,026 - GFF1370 0.33 +0.2
227,238 - GFF1370 0.55 +1.0
227,328 + GFF1370 0.64 -0.0
227,328 + GFF1370 0.64 +0.4
227,328 - GFF1370 0.64 +0.2
227,329 - GFF1370 0.64 +0.6
227,329 - GFF1370 0.64 +0.8
227,411 + GFF1370 0.72 +1.4
227,411 + GFF1370 0.72 +0.0
227,595 + +0.4
227,595 + -0.5
227,595 + +1.8
227,596 - -0.1
227,596 - +1.0
227,750 + -0.6
227,750 + +0.1
227,751 - +0.6
227,751 - -0.1
227,751 - -0.1
227,751 - -0.2
227,965 - GFF1371 0.14 +0.0
227,979 + GFF1371 0.15 +0.8
227,979 + GFF1371 0.15 -0.1
227,979 + GFF1371 0.15 +0.1
227,979 + GFF1371 0.15 +0.3
227,980 - GFF1371 0.15 +0.3
227,980 - GFF1371 0.15 -1.5
227,980 - GFF1371 0.15 +0.2
228,030 + GFF1371 0.18 +1.0
228,030 + GFF1371 0.18 +0.2
228,031 - GFF1371 0.18 +1.3
228,069 + GFF1371 0.21 +0.4
228,069 + GFF1371 0.21 +0.4
228,069 + GFF1371 0.21 +0.2
228,069 + GFF1371 0.21 -0.3
228,070 - GFF1371 0.21 -0.1
228,070 - GFF1371 0.21 +0.4
228,070 - GFF1371 0.21 -0.3
228,070 - GFF1371 0.21 +1.0
228,070 - GFF1371 0.21 +0.9
228,070 - GFF1371 0.21 +0.7
228,070 - GFF1371 0.21 +0.6
228,070 - GFF1371 0.21 +0.3
228,105 + GFF1371 0.23 +0.2
228,106 - GFF1371 0.23 -0.1
228,106 - GFF1371 0.23 -0.6
228,198 + GFF1371 0.29 +0.5
228,198 + GFF1371 0.29 -0.4
228,198 + GFF1371 0.29 +0.5
228,198 + GFF1371 0.29 -0.6
228,198 + GFF1371 0.29 -1.1
228,199 - GFF1371 0.29 -0.1
228,243 + GFF1371 0.32 +0.2
228,243 + GFF1371 0.32 +0.0
228,243 + GFF1371 0.32 +0.4
228,243 + GFF1371 0.32 +0.3
228,244 - GFF1371 0.32 +1.0
228,244 - GFF1371 0.32 -0.1
228,244 - GFF1371 0.32 -0.1
228,408 + GFF1371 0.42 -0.2
228,408 + GFF1371 0.42 +0.4
228,408 + GFF1371 0.42 -0.8
228,409 - GFF1371 0.42 -0.3
228,409 - GFF1371 0.42 -0.2
228,409 - GFF1371 0.42 +1.0
228,651 + GFF1371 0.58 +0.7
228,651 + GFF1371 0.58 +0.3
228,651 + GFF1371 0.58 +1.6
228,651 + GFF1371 0.58 +1.4
228,652 - GFF1371 0.58 +0.2
228,652 - GFF1371 0.58 -0.6
228,652 - GFF1371 0.58 +1.1
228,957 + GFF1371 0.77 -0.1
228,957 + GFF1371 0.77 +1.2
228,957 + GFF1371 0.77 +0.2
228,957 + GFF1371 0.77 +0.4
228,957 + GFF1371 0.77 +0.4
228,958 - GFF1371 0.77 -1.0
228,958 - GFF1371 0.77 +0.1
228,958 - GFF1371 0.77 +0.2
228,958 - GFF1371 0.77 +0.6
228,958 - GFF1371 0.77 +0.5
228,958 - GFF1371 0.77 +0.4
228,958 - GFF1371 0.77 -0.1
228,958 - GFF1371 0.77 -0.4
228,958 - GFF1371 0.77 +0.2
228,958 - GFF1371 0.77 +0.6
228,958 - GFF1371 0.77 +0.3
229,140 + GFF1371 0.89 -0.0
229,140 + GFF1371 0.89 +1.0
229,140 + GFF1371 0.89 -0.4
229,140 + GFF1371 0.89 +0.2
229,141 - GFF1371 0.89 -0.2
229,141 - GFF1371 0.89 +0.0
229,141 - GFF1371 0.89 -0.3
229,143 + GFF1371 0.89 +0.4
229,143 + GFF1371 0.89 -1.1
229,143 + GFF1371 0.89 -0.1
229,144 - GFF1371 0.89 -0.2
229,158 + +1.6
229,158 + +1.6
229,158 + +0.2
229,158 + +1.3
229,158 + -0.8
229,159 - +0.2
229,327 + -0.7
229,327 + +1.5
229,327 + -0.3
229,327 + -0.1
229,328 - +0.2
229,328 - +0.0
229,328 - -0.5
229,328 - -0.3
229,332 - +0.7
229,332 - -0.3
229,332 - -0.0
229,351 + +0.6
229,351 + +1.3
229,351 + -0.1
229,351 + +0.0
229,351 + -0.3
229,351 + +0.0
229,351 + +0.4
229,352 - -1.8
229,352 - -0.2
229,352 - -1.0
229,352 - +0.2
229,352 - +1.9
229,449 + +0.3
229,449 + +0.1
229,449 + +0.7
229,450 - -0.1
229,450 - +0.8
229,450 - +0.7
229,680 + GFF1373 0.50 +0.0
229,680 + GFF1373 0.50 -0.0
229,680 + GFF1373 0.50 -0.2
229,680 + GFF1373 0.50 +1.1
229,680 + GFF1373 0.50 -0.3
229,680 + GFF1373 0.50 +0.3
229,680 + GFF1373 0.50 +0.5
229,680 + GFF1373 0.50 +0.3
229,680 + GFF1373 0.50 +3.0
229,680 + GFF1373 0.50 -0.1
229,680 + GFF1373 0.50 -1.2
229,680 + GFF1373 0.50 -0.6
229,680 + GFF1373 0.50 -0.5
229,680 + GFF1373 0.50 +0.3
229,680 + GFF1373 0.50 +0.1
229,680 + GFF1373 0.50 +0.6
229,680 + GFF1373 0.50 +1.7
229,681 - GFF1373 0.50 -1.6
229,681 - GFF1373 0.50 +0.4
229,681 - GFF1373 0.50 +0.4
229,681 - GFF1373 0.50 +1.0
229,681 - GFF1373 0.50 +1.0
229,681 - GFF1373 0.50 +1.4
229,681 - GFF1373 0.50 +0.9
229,695 + GFF1373 0.52 -0.8
229,695 + GFF1373 0.52 -0.0
229,695 + GFF1373 0.52 -1.3
229,696 - GFF1373 0.53 -0.3
229,696 - GFF1373 0.53 -0.1
229,696 - GFF1373 0.53 +0.4
229,989 + +0.2

Or see this region's nucleotide sequence