Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1262 and GFF1263 overlap by 4 nucleotides GFF1263 and GFF1264 are separated by 9 nucleotides GFF1264 and GFF1265 are separated by 49 nucleotides
GFF1262 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 121,232 to 122,236
GFF1262
GFF1263 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 122,233 to 122,991
GFF1263
GFF1264 - hypothetical protein, at 123,001 to 123,270
GFF1264
GFF1265 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 123,320 to 124,618
GFF1265
Position (kb) 122
123 Strain fitness (log2 ratio) -2
-1
0
1 at 121.269 kb on - strand at 121.493 kb on + strand, within GFF1262 at 121.493 kb on + strand, within GFF1262 at 121.536 kb on - strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.908 kb on - strand, within GFF1262 at 122.362 kb on + strand, within GFF1263 at 122.362 kb on + strand, within GFF1263 at 122.363 kb on - strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.838 kb on - strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.895 kb on + strand, within GFF1263 at 122.896 kb on - strand, within GFF1263 at 122.896 kb on - strand, within GFF1263 at 123.059 kb on + strand, within GFF1264 at 123.059 kb on + strand, within GFF1264 at 123.059 kb on + strand, within GFF1264 at 123.060 kb on - strand, within GFF1264 at 123.060 kb on - strand, within GFF1264 at 123.060 kb on - strand, within GFF1264 at 123.293 kb on + strand at 123.293 kb on + strand at 123.294 kb on - strand at 123.308 kb on - strand at 123.308 kb on - strand at 123.308 kb on - strand at 123.308 kb on - strand at 123.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 121,269 - -0.4 121,493 + GFF1262 0.26 -0.5 121,493 + GFF1262 0.26 -1.0 121,536 - GFF1262 0.30 -1.2 121,907 + GFF1262 0.67 -1.2 121,907 + GFF1262 0.67 +0.4 121,907 + GFF1262 0.67 +1.4 121,907 + GFF1262 0.67 -1.1 121,907 + GFF1262 0.67 -0.3 121,908 - GFF1262 0.67 +0.0 122,362 + GFF1263 0.17 -0.9 122,362 + GFF1263 0.17 +0.1 122,363 - GFF1263 0.17 +0.0 122,837 + GFF1263 0.80 -1.6 122,837 + GFF1263 0.80 +0.9 122,837 + GFF1263 0.80 -0.3 122,838 - GFF1263 0.80 -0.6 122,893 + GFF1263 0.87 -0.1 122,893 + GFF1263 0.87 -0.2 122,893 + GFF1263 0.87 +0.4 122,894 - GFF1263 0.87 -0.6 122,894 - GFF1263 0.87 -2.5 122,894 - GFF1263 0.87 -0.1 122,894 - GFF1263 0.87 -0.5 122,895 + GFF1263 0.87 +0.8 122,896 - GFF1263 0.87 +0.8 122,896 - GFF1263 0.87 -0.7 123,059 + GFF1264 0.21 -1.5 123,059 + GFF1264 0.21 +0.1 123,059 + GFF1264 0.21 +0.1 123,060 - GFF1264 0.22 -0.8 123,060 - GFF1264 0.22 +0.0 123,060 - GFF1264 0.22 -0.3 123,293 + -0.3 123,293 + +0.6 123,294 - +1.0 123,308 - -0.9 123,308 - -0.3 123,308 - -1.2 123,308 - -1.0 123,309 + +1.6
Or see this region's nucleotide sequence