Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1121 and GFF1122 are separated by 51 nucleotides GFF1122 and GFF1123 are separated by 489 nucleotides GFF1123 and GFF1124 are separated by 46 nucleotides GFF1124 and GFF1125 are separated by 547 nucleotides
GFF1121 - Heavy metal sensor histidine kinase, at 50,939 to 52,327
GFF1121
GFF1122 - putative exported protein, at 52,379 to 52,603
GFF1122
GFF1123 - Probable NreB protein, at 53,093 to 54,418
GFF1123
GFF1124 - NreA-like protein, at 54,465 to 54,743
GFF1124
GFF1125 - putative ORF1 [Plasmid pTOM9], at 55,291 to 56,028
GFF1125
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 52.093 kb on + strand, within GFF1121 at 52.094 kb on - strand, within GFF1121 at 52.130 kb on - strand, within GFF1121 at 52.180 kb on + strand, within GFF1121 at 52.180 kb on + strand, within GFF1121 at 52.181 kb on - strand, within GFF1121 at 52.181 kb on - strand, within GFF1121 at 52.181 kb on - strand, within GFF1121 at 52.231 kb on + strand at 52.291 kb on + strand at 52.292 kb on - strand at 52.700 kb on + strand at 52.700 kb on + strand at 52.701 kb on - strand at 52.701 kb on - strand at 52.701 kb on - strand at 52.701 kb on - strand at 52.965 kb on + strand at 52.965 kb on + strand at 52.966 kb on - strand at 53.139 kb on + strand at 53.308 kb on - strand, within GFF1123 at 53.308 kb on - strand, within GFF1123 at 53.356 kb on - strand, within GFF1123 at 53.473 kb on - strand, within GFF1123 at 53.555 kb on + strand, within GFF1123 at 53.556 kb on - strand, within GFF1123 at 53.823 kb on + strand, within GFF1123 at 53.830 kb on + strand, within GFF1123 at 53.830 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.114 kb on + strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.115 kb on - strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.246 kb on + strand, within GFF1123 at 54.247 kb on - strand, within GFF1123 at 54.466 kb on + strand at 54.536 kb on + strand, within GFF1124 at 54.536 kb on + strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.537 kb on - strand, within GFF1124 at 54.773 kb on + strand at 54.773 kb on + strand at 55.106 kb on + strand at 55.106 kb on + strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.107 kb on - strand at 55.355 kb on + strand at 55.392 kb on + strand, within GFF1125
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 52,093 + GFF1121 0.83 +0.2 52,094 - GFF1121 0.83 -0.4 52,130 - GFF1121 0.86 -0.3 52,180 + GFF1121 0.89 +0.2 52,180 + GFF1121 0.89 -0.0 52,181 - GFF1121 0.89 +0.2 52,181 - GFF1121 0.89 -0.1 52,181 - GFF1121 0.89 -0.5 52,231 + +0.2 52,291 + +0.6 52,292 - +0.7 52,700 + +0.3 52,700 + -0.6 52,701 - -0.1 52,701 - +0.6 52,701 - -0.4 52,701 - +0.3 52,965 + -0.2 52,965 + +1.0 52,966 - +1.0 53,139 + -0.6 53,308 - GFF1123 0.16 +1.0 53,308 - GFF1123 0.16 -1.9 53,356 - GFF1123 0.20 -2.2 53,473 - GFF1123 0.29 -0.5 53,555 + GFF1123 0.35 -0.0 53,556 - GFF1123 0.35 +0.3 53,823 + GFF1123 0.55 -0.2 53,830 + GFF1123 0.56 -0.2 53,830 + GFF1123 0.56 +0.2 54,114 + GFF1123 0.77 -0.3 54,114 + GFF1123 0.77 +0.3 54,114 + GFF1123 0.77 -0.4 54,114 + GFF1123 0.77 +0.2 54,114 + GFF1123 0.77 +0.1 54,114 + GFF1123 0.77 -1.7 54,115 - GFF1123 0.77 -0.0 54,115 - GFF1123 0.77 +0.1 54,115 - GFF1123 0.77 -0.0 54,246 + GFF1123 0.87 -1.0 54,246 + GFF1123 0.87 -0.0 54,246 + GFF1123 0.87 -0.9 54,246 + GFF1123 0.87 +1.0 54,246 + GFF1123 0.87 -0.6 54,247 - GFF1123 0.87 -0.0 54,466 + +0.1 54,536 + GFF1124 0.25 +0.8 54,536 + GFF1124 0.25 +0.1 54,537 - GFF1124 0.26 -0.6 54,537 - GFF1124 0.26 +0.2 54,537 - GFF1124 0.26 +0.2 54,773 + +0.8 54,773 + -0.0 55,106 + -0.7 55,106 + -0.4 55,107 - +0.5 55,107 - +0.8 55,107 - -0.9 55,107 - -0.6 55,355 + -0.8 55,392 + GFF1125 0.14 -0.2
Or see this region's nucleotide sequence