Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1021 and GFF1022 are separated by 45 nucleotides GFF1022 and GFF1023 overlap by 4 nucleotides GFF1023 and GFF1024 are separated by 75 nucleotides
GFF1021 - Mobile element protein, at 759,958 to 760,272
GFF1021
GFF1022 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 760,318 to 761,268
GFF1022
GFF1023 - TRAP transporter solute receptor, unknown substrate 3, at 761,265 to 762,317
GFF1023
GFF1024 - putative aldehyde dehydrogenase, at 762,393 to 763,841
GFF1024
Position (kb) 761
762
763 Strain fitness (log2 ratio) -1
0
1
2 at 760.291 kb on + strand at 760.291 kb on + strand at 760.292 kb on - strand at 760.347 kb on - strand at 760.520 kb on + strand, within GFF1022 at 760.521 kb on - strand, within GFF1022 at 760.676 kb on - strand, within GFF1022 at 760.903 kb on + strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 761.042 kb on - strand, within GFF1022 at 761.092 kb on + strand, within GFF1022 at 761.092 kb on + strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.103 kb on + strand, within GFF1022 at 761.157 kb on + strand, within GFF1022 at 761.158 kb on - strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.424 kb on + strand, within GFF1023 at 761.424 kb on + strand, within GFF1023 at 761.424 kb on + strand, within GFF1023 at 761.425 kb on - strand, within GFF1023 at 761.558 kb on + strand, within GFF1023 at 761.559 kb on - strand, within GFF1023 at 761.559 kb on - strand, within GFF1023 at 761.560 kb on + strand, within GFF1023 at 761.561 kb on - strand, within GFF1023 at 761.600 kb on - strand, within GFF1023 at 761.600 kb on - strand, within GFF1023 at 761.778 kb on - strand, within GFF1023 at 761.778 kb on - strand, within GFF1023 at 761.932 kb on + strand, within GFF1023 at 762.040 kb on + strand, within GFF1023 at 762.045 kb on - strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.128 kb on + strand, within GFF1023 at 762.129 kb on - strand, within GFF1023 at 762.212 kb on + strand at 762.212 kb on + strand at 762.213 kb on - strand at 762.214 kb on - strand at 762.381 kb on + strand at 762.385 kb on - strand at 762.640 kb on - strand, within GFF1024 at 762.745 kb on + strand, within GFF1024 at 762.911 kb on - strand, within GFF1024 at 762.911 kb on - strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.943 kb on + strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 762.944 kb on - strand, within GFF1024 at 763.161 kb on + strand, within GFF1024 at 763.161 kb on + strand, within GFF1024 at 763.161 kb on + strand, within GFF1024
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 760,291 + +1.2 760,291 + -0.3 760,292 - -1.1 760,347 - +0.1 760,520 + GFF1022 0.21 -0.3 760,521 - GFF1022 0.21 -0.9 760,676 - GFF1022 0.38 -0.3 760,903 + GFF1022 0.62 +1.9 760,904 - GFF1022 0.62 -0.5 760,904 - GFF1022 0.62 -0.2 760,904 - GFF1022 0.62 -1.1 760,905 + GFF1022 0.62 +0.7 760,905 + GFF1022 0.62 -0.2 760,905 + GFF1022 0.62 -0.1 760,906 - GFF1022 0.62 -0.5 760,906 - GFF1022 0.62 +0.9 760,906 - GFF1022 0.62 -0.3 760,906 - GFF1022 0.62 -0.0 761,042 - GFF1022 0.76 -0.9 761,092 + GFF1022 0.81 -0.9 761,092 + GFF1022 0.81 -0.2 761,093 - GFF1022 0.81 +0.9 761,093 - GFF1022 0.81 -0.3 761,093 - GFF1022 0.81 -0.7 761,093 - GFF1022 0.81 -0.1 761,103 + GFF1022 0.83 +0.7 761,157 + GFF1022 0.88 -0.3 761,158 - GFF1022 0.88 -1.5 761,160 + GFF1022 0.89 -0.3 761,160 + GFF1022 0.89 -0.5 761,160 + GFF1022 0.89 -0.2 761,161 - GFF1022 0.89 -0.7 761,161 - GFF1022 0.89 +0.2 761,161 - GFF1022 0.89 +0.1 761,161 - GFF1022 0.89 +1.2 761,424 + GFF1023 0.15 -0.3 761,424 + GFF1023 0.15 -0.1 761,424 + GFF1023 0.15 -0.1 761,425 - GFF1023 0.15 -0.2 761,558 + GFF1023 0.28 -0.1 761,559 - GFF1023 0.28 -0.4 761,559 - GFF1023 0.28 -0.1 761,560 + GFF1023 0.28 +0.9 761,561 - GFF1023 0.28 -1.1 761,600 - GFF1023 0.32 -0.8 761,600 - GFF1023 0.32 +0.3 761,778 - GFF1023 0.49 +0.5 761,778 - GFF1023 0.49 +0.3 761,932 + GFF1023 0.63 -0.2 762,040 + GFF1023 0.74 -0.7 762,045 - GFF1023 0.74 -0.7 762,128 + GFF1023 0.82 +0.0 762,128 + GFF1023 0.82 -0.1 762,128 + GFF1023 0.82 +0.1 762,128 + GFF1023 0.82 -0.7 762,129 - GFF1023 0.82 +0.5 762,212 + +0.2 762,212 + -0.1 762,213 - +0.7 762,214 - -1.5 762,381 + +0.3 762,385 - +0.3 762,640 - GFF1024 0.17 -1.7 762,745 + GFF1024 0.24 -0.3 762,911 - GFF1024 0.36 -0.3 762,911 - GFF1024 0.36 +0.3 762,943 + GFF1024 0.38 +1.3 762,943 + GFF1024 0.38 -0.2 762,943 + GFF1024 0.38 -0.2 762,944 - GFF1024 0.38 -1.4 762,944 - GFF1024 0.38 -0.7 762,944 - GFF1024 0.38 -0.3 763,161 + GFF1024 0.53 -0.1 763,161 + GFF1024 0.53 +1.5 763,161 + GFF1024 0.53 +0.5
Or see this region's nucleotide sequence