Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS04705

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS04700 and HMPREF1181_RS04705 are separated by 82 nucleotidesHMPREF1181_RS04705 and HMPREF1181_RS04710 are separated by 9 nucleotidesHMPREF1181_RS04710 and HMPREF1181_RS04715 are separated by 170 nucleotides HMPREF1181_RS04700: HMPREF1181_RS04700 - S46 family peptidase, at 192,222 to 194,411 _RS04700 HMPREF1181_RS04705: HMPREF1181_RS04705 - thioredoxin, at 194,494 to 194,790 _RS04705 HMPREF1181_RS04710: HMPREF1181_RS04710 - redoxin domain-containing protein, at 194,800 to 195,270 _RS04710 HMPREF1181_RS04715: HMPREF1181_RS04715 - histidinol-phosphatase, at 195,441 to 196,292 _RS04715 Position (kb) 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 193.543 kb on - strand, within HMPREF1181_RS04700at 193.614 kb on + strand, within HMPREF1181_RS04700at 193.765 kb on - strand, within HMPREF1181_RS04700at 193.765 kb on - strand, within HMPREF1181_RS04700at 193.800 kb on + strand, within HMPREF1181_RS04700at 193.800 kb on + strand, within HMPREF1181_RS04700at 193.830 kb on - strand, within HMPREF1181_RS04700at 193.830 kb on - strand, within HMPREF1181_RS04700at 193.860 kb on + strand, within HMPREF1181_RS04700at 193.885 kb on + strand, within HMPREF1181_RS04700at 193.885 kb on + strand, within HMPREF1181_RS04700at 193.926 kb on - strand, within HMPREF1181_RS04700at 193.926 kb on - strand, within HMPREF1181_RS04700at 193.927 kb on + strand, within HMPREF1181_RS04700at 193.928 kb on - strand, within HMPREF1181_RS04700at 193.928 kb on - strand, within HMPREF1181_RS04700at 193.930 kb on - strand, within HMPREF1181_RS04700at 193.930 kb on - strand, within HMPREF1181_RS04700at 193.962 kb on + strand, within HMPREF1181_RS04700at 193.962 kb on + strand, within HMPREF1181_RS04700at 194.014 kb on - strand, within HMPREF1181_RS04700at 194.014 kb on - strand, within HMPREF1181_RS04700at 194.094 kb on + strand, within HMPREF1181_RS04700at 194.118 kb on + strand, within HMPREF1181_RS04700at 194.147 kb on - strand, within HMPREF1181_RS04700at 194.147 kb on - strand, within HMPREF1181_RS04700at 194.221 kb on + strandat 194.226 kb on - strandat 194.244 kb on + strandat 194.325 kb on - strandat 194.338 kb on - strandat 194.464 kb on + strandat 194.465 kb on - strandat 194.467 kb on - strandat 194.476 kb on - strandat 194.572 kb on - strand, within HMPREF1181_RS04705at 194.645 kb on + strand, within HMPREF1181_RS04705at 194.681 kb on + strand, within HMPREF1181_RS04705at 194.681 kb on + strand, within HMPREF1181_RS04705at 194.681 kb on + strand, within HMPREF1181_RS04705at 194.764 kb on - strandat 194.789 kb on - strandat 194.814 kb on - strandat 194.918 kb on + strand, within HMPREF1181_RS04710at 194.918 kb on + strand, within HMPREF1181_RS04710at 195.018 kb on - strand, within HMPREF1181_RS04710at 195.020 kb on - strand, within HMPREF1181_RS04710at 195.057 kb on + strand, within HMPREF1181_RS04710at 195.102 kb on - strand, within HMPREF1181_RS04710at 195.103 kb on + strand, within HMPREF1181_RS04710at 195.104 kb on - strand, within HMPREF1181_RS04710at 195.104 kb on - strand, within HMPREF1181_RS04710at 195.203 kb on + strand, within HMPREF1181_RS04710at 195.232 kb on + strandat 195.278 kb on - strandat 195.279 kb on - strandat 195.293 kb on + strandat 195.304 kb on - strandat 195.444 kb on + strandat 195.445 kb on - strandat 195.448 kb on - strandat 195.616 kb on + strand, within HMPREF1181_RS04715at 195.666 kb on + strand, within HMPREF1181_RS04715at 195.707 kb on - strand, within HMPREF1181_RS04715at 195.723 kb on - strand, within HMPREF1181_RS04715at 195.757 kb on + strand, within HMPREF1181_RS04715at 195.771 kb on - strand, within HMPREF1181_RS04715

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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193,543 - HMPREF1181_RS04700 0.60 +0.3
193,614 + HMPREF1181_RS04700 0.64 -0.4
193,765 - HMPREF1181_RS04700 0.70 -0.7
193,765 - HMPREF1181_RS04700 0.70 +0.1
193,800 + HMPREF1181_RS04700 0.72 -1.6
193,800 + HMPREF1181_RS04700 0.72 -1.1
193,830 - HMPREF1181_RS04700 0.73 +1.0
193,830 - HMPREF1181_RS04700 0.73 -0.2
193,860 + HMPREF1181_RS04700 0.75 +0.3
193,885 + HMPREF1181_RS04700 0.76 -0.1
193,885 + HMPREF1181_RS04700 0.76 -0.3
193,926 - HMPREF1181_RS04700 0.78 -0.1
193,926 - HMPREF1181_RS04700 0.78 +0.7
193,927 + HMPREF1181_RS04700 0.78 +0.6
193,928 - HMPREF1181_RS04700 0.78 -1.1
193,928 - HMPREF1181_RS04700 0.78 -0.5
193,930 - HMPREF1181_RS04700 0.78 -2.1
193,930 - HMPREF1181_RS04700 0.78 +0.4
193,962 + HMPREF1181_RS04700 0.79 -0.2
193,962 + HMPREF1181_RS04700 0.79 -0.5
194,014 - HMPREF1181_RS04700 0.82 -0.3
194,014 - HMPREF1181_RS04700 0.82 -0.3
194,094 + HMPREF1181_RS04700 0.85 -0.0
194,118 + HMPREF1181_RS04700 0.87 -0.9
194,147 - HMPREF1181_RS04700 0.88 -0.1
194,147 - HMPREF1181_RS04700 0.88 +0.4
194,221 + -0.3
194,226 - -0.0
194,244 + -0.1
194,325 - +0.3
194,338 - +0.2
194,464 + +0.4
194,465 - -0.2
194,467 - -0.1
194,476 - +0.5
194,572 - HMPREF1181_RS04705 0.26 +0.8
194,645 + HMPREF1181_RS04705 0.51 +1.9
194,681 + HMPREF1181_RS04705 0.63 +0.6
194,681 + HMPREF1181_RS04705 0.63 +0.4
194,681 + HMPREF1181_RS04705 0.63 +0.9
194,764 - +0.9
194,789 - +0.2
194,814 - +1.0
194,918 + HMPREF1181_RS04710 0.25 +2.5
194,918 + HMPREF1181_RS04710 0.25 +0.3
195,018 - HMPREF1181_RS04710 0.46 +1.5
195,020 - HMPREF1181_RS04710 0.47 +0.4
195,057 + HMPREF1181_RS04710 0.55 -0.4
195,102 - HMPREF1181_RS04710 0.64 -0.2
195,103 + HMPREF1181_RS04710 0.64 -0.3
195,104 - HMPREF1181_RS04710 0.65 +0.0
195,104 - HMPREF1181_RS04710 0.65 +0.8
195,203 + HMPREF1181_RS04710 0.86 +0.5
195,232 + +0.4
195,278 - -0.1
195,279 - -0.2
195,293 + +0.0
195,304 - -0.9
195,444 + +0.0
195,445 - +0.5
195,448 - +0.7
195,616 + HMPREF1181_RS04715 0.21 +0.1
195,666 + HMPREF1181_RS04715 0.26 +0.0
195,707 - HMPREF1181_RS04715 0.31 +0.8
195,723 - HMPREF1181_RS04715 0.33 -0.2
195,757 + HMPREF1181_RS04715 0.37 -1.0
195,771 - HMPREF1181_RS04715 0.39 +0.4

Or see this region's nucleotide sequence