Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02480 and HMPREF1181_RS02485 are separated by 9 nucleotides HMPREF1181_RS02485 and HMPREF1181_RS02490 are separated by 55 nucleotides HMPREF1181_RS02490 and HMPREF1181_RS02495 are separated by 144 nucleotides
HMPREF1181_RS02480: HMPREF1181_RS02480 - glycosyltransferase, at 620,189 to 621,208
_RS02480
HMPREF1181_RS02485: HMPREF1181_RS02485 - glycosyltransferase family 8 protein, at 621,218 to 622,138
_RS02485
HMPREF1181_RS02490: HMPREF1181_RS02490 - glycosyltransferase family 2 protein, at 622,194 to 622,841
_RS02490
HMPREF1181_RS02495: HMPREF1181_RS02495 - transposase, at 622,986 to 624,344
_RS02495
Position (kb) 622
623 Strain fitness (log2 ratio) -1
0
1
2 at 621.207 kb on - strand at 621.226 kb on + strand at 621.227 kb on - strand at 621.227 kb on - strand at 621.238 kb on + strand at 621.295 kb on + strand at 621.322 kb on + strand, within HMPREF1181_RS02485 at 621.323 kb on - strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.328 kb on - strand, within HMPREF1181_RS02485 at 621.363 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.405 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.525 kb on + strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.531 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.552 kb on + strand, within HMPREF1181_RS02485 at 621.563 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.664 kb on + strand, within HMPREF1181_RS02485 at 621.665 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.765 kb on - strand, within HMPREF1181_RS02485 at 621.784 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.945 kb on - strand, within HMPREF1181_RS02485 at 621.947 kb on - strand, within HMPREF1181_RS02485 at 621.969 kb on - strand, within HMPREF1181_RS02485 at 621.976 kb on + strand, within HMPREF1181_RS02485 at 621.977 kb on - strand, within HMPREF1181_RS02485 at 622.002 kb on - strand, within HMPREF1181_RS02485 at 622.003 kb on + strand, within HMPREF1181_RS02485 at 622.004 kb on - strand, within HMPREF1181_RS02485 at 622.016 kb on - strand, within HMPREF1181_RS02485 at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.118 kb on + strand at 622.208 kb on + strand at 622.209 kb on - strand at 622.216 kb on + strand at 622.249 kb on + strand at 622.256 kb on - strand at 622.470 kb on - strand, within HMPREF1181_RS02490 at 622.526 kb on + strand, within HMPREF1181_RS02490 at 622.526 kb on + strand, within HMPREF1181_RS02490 at 622.527 kb on - strand, within HMPREF1181_RS02490 at 622.527 kb on - strand, within HMPREF1181_RS02490 at 622.595 kb on + strand, within HMPREF1181_RS02490 at 622.619 kb on - strand, within HMPREF1181_RS02490 at 622.671 kb on + strand, within HMPREF1181_RS02490 at 622.672 kb on - strand, within HMPREF1181_RS02490 at 622.672 kb on - strand, within HMPREF1181_RS02490 at 622.782 kb on + strand at 622.784 kb on + strand at 622.784 kb on + strand at 622.785 kb on - strand at 622.785 kb on - strand at 622.790 kb on + strand at 622.791 kb on - strand at 622.792 kb on + strand at 622.793 kb on - strand at 622.820 kb on - strand at 622.853 kb on - strand at 622.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 621,207 - -0.0 621,226 + +0.3 621,227 - +0.2 621,227 - +0.3 621,238 + +0.1 621,295 + -0.4 621,322 + HMPREF1181_RS02485 0.11 -1.2 621,323 - HMPREF1181_RS02485 0.11 -0.5 621,327 + HMPREF1181_RS02485 0.12 +0.7 621,327 + HMPREF1181_RS02485 0.12 -0.0 621,328 - HMPREF1181_RS02485 0.12 -1.0 621,363 + HMPREF1181_RS02485 0.16 +0.7 621,404 + HMPREF1181_RS02485 0.20 -1.0 621,404 + HMPREF1181_RS02485 0.20 +0.0 621,404 + HMPREF1181_RS02485 0.20 -0.5 621,405 - HMPREF1181_RS02485 0.20 -1.0 621,477 - HMPREF1181_RS02485 0.28 +0.2 621,477 - HMPREF1181_RS02485 0.28 -0.3 621,525 + HMPREF1181_RS02485 0.33 -0.1 621,526 - HMPREF1181_RS02485 0.33 +0.6 621,526 - HMPREF1181_RS02485 0.33 +0.5 621,530 + HMPREF1181_RS02485 0.34 -0.4 621,530 + HMPREF1181_RS02485 0.34 +0.2 621,531 - HMPREF1181_RS02485 0.34 +0.5 621,550 - HMPREF1181_RS02485 0.36 -0.2 621,550 - HMPREF1181_RS02485 0.36 +0.5 621,552 + HMPREF1181_RS02485 0.36 +0.2 621,563 - HMPREF1181_RS02485 0.37 -0.1 621,660 - HMPREF1181_RS02485 0.48 +0.1 621,660 - HMPREF1181_RS02485 0.48 -0.3 621,664 + HMPREF1181_RS02485 0.48 -0.6 621,665 - HMPREF1181_RS02485 0.49 +0.1 621,728 - HMPREF1181_RS02485 0.55 +0.5 621,728 - HMPREF1181_RS02485 0.55 +0.6 621,765 - HMPREF1181_RS02485 0.59 +1.2 621,784 + HMPREF1181_RS02485 0.61 -0.3 621,944 + HMPREF1181_RS02485 0.79 -0.1 621,944 + HMPREF1181_RS02485 0.79 -0.0 621,945 - HMPREF1181_RS02485 0.79 +0.2 621,947 - HMPREF1181_RS02485 0.79 +1.1 621,969 - HMPREF1181_RS02485 0.82 -0.2 621,976 + HMPREF1181_RS02485 0.82 +0.3 621,977 - HMPREF1181_RS02485 0.82 +0.0 622,002 - HMPREF1181_RS02485 0.85 -0.4 622,003 + HMPREF1181_RS02485 0.85 -0.1 622,004 - HMPREF1181_RS02485 0.85 -0.7 622,016 - HMPREF1181_RS02485 0.87 -0.1 622,078 + +0.7 622,078 + +0.2 622,078 + +0.1 622,078 + -0.0 622,118 + -0.5 622,208 + +0.2 622,209 - +0.9 622,216 + -1.0 622,249 + +0.3 622,256 - -0.1 622,470 - HMPREF1181_RS02490 0.43 -0.5 622,526 + HMPREF1181_RS02490 0.51 -0.1 622,526 + HMPREF1181_RS02490 0.51 -0.5 622,527 - HMPREF1181_RS02490 0.51 +1.9 622,527 - HMPREF1181_RS02490 0.51 +0.8 622,595 + HMPREF1181_RS02490 0.62 +0.8 622,619 - HMPREF1181_RS02490 0.66 +0.1 622,671 + HMPREF1181_RS02490 0.74 +0.6 622,672 - HMPREF1181_RS02490 0.74 +0.0 622,672 - HMPREF1181_RS02490 0.74 +0.9 622,782 + -1.1 622,784 + +0.3 622,784 + -1.5 622,785 - +0.7 622,785 - -0.1 622,790 + -0.6 622,791 - +0.1 622,792 + +0.3 622,793 - +0.0 622,820 - +0.5 622,853 - +0.3 622,853 - +0.2
Or see this region's nucleotide sequence