Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF972 and GFF973 are separated by 61 nucleotides GFF973 and GFF974 overlap by 4 nucleotides
GFF972 - Thiolase precursor, at 708,945 to 710,102
GFF972
GFF973 - hypothetical protein, at 710,164 to 710,571
GFF973
GFF974 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 710,568 to 711,737
GFF974
Position (kb) 710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.261 kb on + strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.398 kb on + strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.636 kb on + strand, within GFF972 at 709.670 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.891 kb on + strand, within GFF972 at 709.924 kb on + strand, within GFF972 at 709.924 kb on + strand, within GFF972 at 709.925 kb on - strand, within GFF972 at 710.330 kb on + strand, within GFF973 at 710.632 kb on + strand at 710.632 kb on + strand at 710.633 kb on - strand at 710.633 kb on - strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.657 kb on - strand at 710.657 kb on - strand at 710.761 kb on + strand, within GFF974 at 710.845 kb on + strand, within GFF974 at 710.846 kb on - strand, within GFF974 at 710.960 kb on - strand, within GFF974 at 710.960 kb on - strand, within GFF974 at 711.035 kb on + strand, within GFF974 at 711.035 kb on + strand, within GFF974 at 711.273 kb on - strand, within GFF974 at 711.273 kb on - strand, within GFF974 at 711.388 kb on + strand, within GFF974 at 711.388 kb on + strand, within GFF974 at 711.388 kb on + strand, within GFF974 at 711.388 kb on + strand, within GFF974 at 711.388 kb on + strand, within GFF974 at 711.389 kb on - strand, within GFF974 at 711.389 kb on - strand, within GFF974 at 711.391 kb on + strand, within GFF974 at 711.391 kb on + strand, within GFF974 at 711.391 kb on + strand, within GFF974 at 711.535 kb on + strand, within GFF974
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 709,261 + GFF972 0.27 -0.4 709,262 - GFF972 0.27 +0.4 709,262 - GFF972 0.27 +1.4 709,398 + GFF972 0.39 -0.4 709,399 - GFF972 0.39 -0.5 709,399 - GFF972 0.39 -0.1 709,405 + GFF972 0.40 +1.4 709,405 + GFF972 0.40 +1.1 709,636 + GFF972 0.60 +0.7 709,670 - GFF972 0.63 -0.5 709,697 - GFF972 0.65 -0.4 709,697 - GFF972 0.65 -0.5 709,708 + GFF972 0.66 +0.3 709,708 + GFF972 0.66 +0.1 709,709 - GFF972 0.66 -0.1 709,709 - GFF972 0.66 -0.5 709,709 - GFF972 0.66 -0.4 709,837 + GFF972 0.77 +0.0 709,837 + GFF972 0.77 +1.9 709,837 + GFF972 0.77 -0.0 709,837 + GFF972 0.77 -1.9 709,837 + GFF972 0.77 +0.1 709,838 - GFF972 0.77 +0.4 709,838 - GFF972 0.77 +1.5 709,838 - GFF972 0.77 +0.3 709,891 + GFF972 0.82 -1.1 709,924 + GFF972 0.85 -0.1 709,924 + GFF972 0.85 -0.4 709,925 - GFF972 0.85 +0.3 710,330 + GFF973 0.41 +0.2 710,632 + +0.4 710,632 + -0.1 710,633 - -0.2 710,633 - +0.0 710,656 + +0.1 710,656 + +0.3 710,656 + +0.2 710,656 + +0.1 710,657 - +0.9 710,657 - -0.5 710,761 + GFF974 0.16 +0.1 710,845 + GFF974 0.24 +1.9 710,846 - GFF974 0.24 +0.2 710,960 - GFF974 0.34 +1.1 710,960 - GFF974 0.34 +0.0 711,035 + GFF974 0.40 -1.7 711,035 + GFF974 0.40 -1.1 711,273 - GFF974 0.60 -0.1 711,273 - GFF974 0.60 +0.2 711,388 + GFF974 0.70 -0.2 711,388 + GFF974 0.70 -0.7 711,388 + GFF974 0.70 -0.2 711,388 + GFF974 0.70 -1.2 711,388 + GFF974 0.70 -0.1 711,389 - GFF974 0.70 +0.7 711,389 - GFF974 0.70 -0.2 711,391 + GFF974 0.70 -0.7 711,391 + GFF974 0.70 -0.3 711,391 + GFF974 0.70 -1.7 711,535 + GFF974 0.83 +0.2
Or see this region's nucleotide sequence