Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF957 and GFF958 are separated by 870 nucleotides GFF958 and GFF959 are separated by 59 nucleotides
GFF957 - MaoC-like dehydratase, at 692,052 to 692,561
GFF957
GFF958 - Naphthoate synthase (EC 4.1.3.36), at 693,432 to 694,223
GFF958
GFF959 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 694,283 to 695,080
GFF959
Position (kb) 693
694
695 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 692.500 kb on + strand, within GFF957 at 692.500 kb on + strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.527 kb on + strand at 692.527 kb on + strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.529 kb on + strand at 692.635 kb on + strand at 692.635 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.652 kb on - strand at 692.707 kb on + strand at 692.707 kb on + strand at 692.708 kb on - strand at 692.752 kb on - strand at 692.794 kb on + strand at 692.794 kb on + strand at 692.795 kb on - strand at 692.908 kb on + strand at 692.909 kb on - strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.972 kb on - strand at 693.004 kb on + strand at 693.004 kb on + strand at 693.005 kb on - strand at 693.133 kb on - strand at 693.133 kb on - strand at 693.133 kb on - strand at 693.169 kb on + strand at 693.170 kb on - strand at 693.172 kb on + strand at 693.172 kb on + strand at 693.173 kb on - strand at 693.173 kb on - strand at 693.173 kb on - strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.221 kb on + strand at 693.222 kb on - strand at 693.222 kb on - strand at 693.222 kb on - strand at 693.233 kb on - strand at 693.250 kb on - strand at 693.250 kb on - strand at 693.326 kb on + strand at 693.327 kb on - strand at 693.327 kb on - strand at 693.351 kb on + strand at 693.351 kb on + strand at 693.352 kb on - strand at 693.371 kb on + strand at 693.381 kb on - strand at 693.381 kb on - strand at 693.381 kb on - strand at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.724 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.739 kb on + strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.740 kb on - strand, within GFF958 at 693.784 kb on + strand, within GFF958 at 693.784 kb on + strand, within GFF958 at 693.784 kb on + strand, within GFF958 at 693.784 kb on + strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.785 kb on - strand, within GFF958 at 693.816 kb on + strand, within GFF958 at 693.816 kb on + strand, within GFF958 at 693.816 kb on + strand, within GFF958 at 693.817 kb on - strand, within GFF958 at 693.817 kb on - strand, within GFF958 at 693.817 kb on - strand, within GFF958 at 693.817 kb on - strand, within GFF958 at 693.817 kb on - strand, within GFF958 at 693.907 kb on + strand, within GFF958 at 693.908 kb on - strand, within GFF958 at 693.977 kb on + strand, within GFF958 at 693.978 kb on - strand, within GFF958 at 694.000 kb on + strand, within GFF958 at 694.103 kb on - strand, within GFF958 at 694.177 kb on + strand at 694.177 kb on + strand at 694.177 kb on + strand at 694.177 kb on + strand at 694.177 kb on + strand at 694.177 kb on + strand at 694.178 kb on - strand at 694.178 kb on - strand at 694.178 kb on - strand at 694.202 kb on - strand at 694.244 kb on + strand at 694.245 kb on - strand at 694.284 kb on + strand at 694.285 kb on - strand at 694.299 kb on + strand at 694.299 kb on + strand at 694.300 kb on - strand at 694.300 kb on - strand at 694.382 kb on - strand, within GFF959 at 694.382 kb on - strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.453 kb on + strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.454 kb on - strand, within GFF959 at 694.501 kb on + strand, within GFF959 at 694.510 kb on + strand, within GFF959 at 694.511 kb on - strand, within GFF959 at 694.526 kb on + strand, within GFF959 at 694.526 kb on + strand, within GFF959 at 694.526 kb on + strand, within GFF959 at 694.526 kb on + strand, within GFF959 at 694.527 kb on - strand, within GFF959 at 694.527 kb on - strand, within GFF959 at 694.549 kb on - strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.611 kb on + strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.612 kb on - strand, within GFF959 at 694.731 kb on + strand, within GFF959 at 694.731 kb on + strand, within GFF959 at 694.731 kb on + strand, within GFF959 at 694.731 kb on + strand, within GFF959 at 694.732 kb on - strand, within GFF959 at 694.732 kb on - strand, within GFF959 at 694.732 kb on - strand, within GFF959 at 694.732 kb on - strand, within GFF959 at 695.066 kb on + strand at 695.066 kb on + strand at 695.066 kb on + strand at 695.067 kb on - strand at 695.080 kb on + strand at 695.080 kb on + strand at 695.080 kb on + strand at 695.081 kb on - strand at 695.102 kb on - strand at 695.194 kb on + strand at 695.217 kb on + strand at 695.217 kb on + strand at 695.217 kb on + strand at 695.218 kb on - strand at 695.218 kb on - strand at 695.218 kb on - strand at 695.218 kb on - strand at 695.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 692,500 + GFF957 0.88 +0.6 692,500 + GFF957 0.88 +0.0 692,501 - GFF957 0.88 +0.2 692,501 - GFF957 0.88 -0.0 692,527 + -0.5 692,527 + -0.4 692,528 - -0.5 692,528 - -1.7 692,528 - +0.7 692,528 - +0.0 692,528 - +0.4 692,528 - +0.6 692,528 - -0.5 692,529 + -0.3 692,635 + +0.2 692,635 + +1.1 692,651 + -0.2 692,651 + -0.4 692,651 + -0.4 692,651 + -0.5 692,651 + +0.3 692,652 - -0.2 692,707 + -0.2 692,707 + -0.1 692,708 - +0.0 692,752 - -1.7 692,794 + -3.6 692,794 + -2.7 692,795 - -1.1 692,908 + -2.2 692,909 - -2.1 692,971 + -1.1 692,971 + -2.6 692,971 + -3.2 692,972 - -2.1 693,004 + -4.2 693,004 + -0.7 693,005 - -4.5 693,133 - -2.4 693,133 - -2.4 693,133 - -2.4 693,169 + -3.3 693,170 - -1.1 693,172 + -3.2 693,172 + -3.4 693,173 - -3.7 693,173 - -3.0 693,173 - -2.9 693,176 + -0.1 693,176 + -1.7 693,176 + -0.7 693,176 + -2.9 693,176 + -3.5 693,221 + -1.1 693,222 - -3.9 693,222 - -3.4 693,222 - -4.8 693,233 - -4.8 693,250 - +0.9 693,250 - -1.7 693,326 + -2.1 693,327 - -1.4 693,327 - -2.1 693,351 + -2.2 693,351 + -2.1 693,352 - -0.2 693,371 + -1.1 693,381 - -0.3 693,381 - +0.8 693,381 - +0.8 693,520 + GFF958 0.11 +0.7 693,520 + GFF958 0.11 -0.3 693,520 + GFF958 0.11 -1.0 693,520 + GFF958 0.11 -0.9 693,520 + GFF958 0.11 -0.9 693,520 + GFF958 0.11 +0.1 693,520 + GFF958 0.11 -0.4 693,520 + GFF958 0.11 -0.9 693,521 - GFF958 0.11 -0.3 693,521 - GFF958 0.11 +0.8 693,521 - GFF958 0.11 +0.9 693,523 + GFF958 0.11 -0.5 693,523 + GFF958 0.11 -1.6 693,523 + GFF958 0.11 -0.3 693,524 - GFF958 0.12 +0.0 693,524 - GFF958 0.12 +0.2 693,524 - GFF958 0.12 -0.0 693,524 - GFF958 0.12 +0.9 693,524 - GFF958 0.12 +0.9 693,524 - GFF958 0.12 -0.1 693,524 - GFF958 0.12 -0.5 693,724 + GFF958 0.37 -0.7 693,739 + GFF958 0.39 +0.5 693,739 + GFF958 0.39 +0.3 693,739 + GFF958 0.39 +0.2 693,739 + GFF958 0.39 +0.9 693,739 + GFF958 0.39 +1.1 693,739 + GFF958 0.39 -0.4 693,740 - GFF958 0.39 +0.2 693,740 - GFF958 0.39 +0.3 693,740 - GFF958 0.39 +0.3 693,740 - GFF958 0.39 +0.3 693,740 - GFF958 0.39 -1.4 693,740 - GFF958 0.39 -0.7 693,740 - GFF958 0.39 -0.8 693,740 - GFF958 0.39 +1.1 693,740 - GFF958 0.39 -0.8 693,740 - GFF958 0.39 +0.1 693,740 - GFF958 0.39 -0.2 693,740 - GFF958 0.39 -1.0 693,740 - GFF958 0.39 +1.3 693,784 + GFF958 0.44 -1.2 693,784 + GFF958 0.44 +1.2 693,784 + GFF958 0.44 +1.5 693,784 + GFF958 0.44 +0.1 693,785 - GFF958 0.45 +0.1 693,785 - GFF958 0.45 -0.5 693,785 - GFF958 0.45 -0.3 693,785 - GFF958 0.45 -1.2 693,785 - GFF958 0.45 +0.1 693,785 - GFF958 0.45 -0.2 693,785 - GFF958 0.45 +0.3 693,785 - GFF958 0.45 -0.4 693,785 - GFF958 0.45 +0.2 693,785 - GFF958 0.45 -0.5 693,785 - GFF958 0.45 -1.4 693,816 + GFF958 0.48 -0.5 693,816 + GFF958 0.48 -0.5 693,816 + GFF958 0.48 +0.9 693,817 - GFF958 0.49 +0.7 693,817 - GFF958 0.49 -0.2 693,817 - GFF958 0.49 -1.0 693,817 - GFF958 0.49 +0.4 693,817 - GFF958 0.49 -0.1 693,907 + GFF958 0.60 -0.3 693,908 - GFF958 0.60 -0.2 693,977 + GFF958 0.69 +0.1 693,978 - GFF958 0.69 -1.2 694,000 + GFF958 0.72 -0.7 694,103 - GFF958 0.85 +0.4 694,177 + +0.2 694,177 + +0.1 694,177 + -0.6 694,177 + +0.9 694,177 + -0.1 694,177 + -0.4 694,178 - -0.2 694,178 - -0.2 694,178 - +0.1 694,202 - -0.1 694,244 + +0.2 694,245 - +3.5 694,284 + +0.2 694,285 - +0.8 694,299 + +0.6 694,299 + -0.7 694,300 - -0.8 694,300 - +0.5 694,382 - GFF959 0.12 +0.2 694,382 - GFF959 0.12 +0.9 694,453 + GFF959 0.21 -0.2 694,453 + GFF959 0.21 +0.9 694,453 + GFF959 0.21 +0.2 694,453 + GFF959 0.21 +0.1 694,453 + GFF959 0.21 +0.3 694,453 + GFF959 0.21 +0.3 694,453 + GFF959 0.21 +0.3 694,453 + GFF959 0.21 -0.2 694,453 + GFF959 0.21 +1.9 694,453 + GFF959 0.21 -0.7 694,453 + GFF959 0.21 +0.2 694,454 - GFF959 0.21 +0.5 694,454 - GFF959 0.21 -0.7 694,454 - GFF959 0.21 +0.6 694,454 - GFF959 0.21 +0.0 694,454 - GFF959 0.21 +1.4 694,454 - GFF959 0.21 +0.2 694,454 - GFF959 0.21 -0.1 694,454 - GFF959 0.21 +0.3 694,454 - GFF959 0.21 -0.4 694,454 - GFF959 0.21 +0.2 694,454 - GFF959 0.21 -2.8 694,501 + GFF959 0.27 -0.4 694,510 + GFF959 0.28 -2.9 694,511 - GFF959 0.29 -0.1 694,526 + GFF959 0.30 -0.4 694,526 + GFF959 0.30 +0.8 694,526 + GFF959 0.30 -0.1 694,526 + GFF959 0.30 +0.3 694,527 - GFF959 0.31 -1.0 694,527 - GFF959 0.31 +0.1 694,549 - GFF959 0.33 +0.2 694,611 + GFF959 0.41 -0.1 694,611 + GFF959 0.41 -0.2 694,611 + GFF959 0.41 +0.6 694,611 + GFF959 0.41 -0.1 694,611 + GFF959 0.41 -0.5 694,611 + GFF959 0.41 -0.9 694,611 + GFF959 0.41 -0.6 694,611 + GFF959 0.41 +0.0 694,611 + GFF959 0.41 +0.1 694,612 - GFF959 0.41 -0.9 694,612 - GFF959 0.41 -0.1 694,612 - GFF959 0.41 -0.3 694,612 - GFF959 0.41 +0.5 694,612 - GFF959 0.41 +0.3 694,612 - GFF959 0.41 -0.4 694,731 + GFF959 0.56 +0.7 694,731 + GFF959 0.56 +0.8 694,731 + GFF959 0.56 +1.3 694,731 + GFF959 0.56 -0.3 694,732 - GFF959 0.56 +0.5 694,732 - GFF959 0.56 +0.4 694,732 - GFF959 0.56 -0.1 694,732 - GFF959 0.56 -0.1 695,066 + -0.7 695,066 + -0.2 695,066 + +0.3 695,067 - +0.9 695,080 + -0.2 695,080 + -1.1 695,080 + -0.9 695,081 - -1.0 695,102 - -1.1 695,194 + +0.0 695,217 + -0.1 695,217 + +0.1 695,217 + +0.3 695,218 - -0.2 695,218 - -1.8 695,218 - -0.4 695,218 - -0.2 695,218 - +0.9
Or see this region's nucleotide sequence