Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF956 and GFF957 are separated by 62 nucleotides GFF957 and GFF958 are separated by 870 nucleotides
GFF956 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 690,304 to 691,989
GFF956
GFF957 - MaoC-like dehydratase, at 692,052 to 692,561
GFF957
GFF958 - Naphthoate synthase (EC 4.1.3.36), at 693,432 to 694,223
GFF958
Position (kb) 692
693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 691.160 kb on + strand, within GFF956 at 691.160 kb on + strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.161 kb on - strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.229 kb on + strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.230 kb on - strand, within GFF956 at 691.264 kb on + strand, within GFF956 at 691.265 kb on - strand, within GFF956 at 691.265 kb on - strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.361 kb on + strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.362 kb on - strand, within GFF956 at 691.365 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.418 kb on + strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.419 kb on - strand, within GFF956 at 691.495 kb on - strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.498 kb on + strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.499 kb on - strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.625 kb on + strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.626 kb on - strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.762 kb on + strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.763 kb on - strand, within GFF956 at 691.766 kb on + strand, within GFF956 at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.937 kb on + strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.938 kb on - strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.961 kb on + strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 691.962 kb on - strand at 692.110 kb on + strand, within GFF957 at 692.110 kb on + strand, within GFF957 at 692.110 kb on + strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.111 kb on - strand, within GFF957 at 692.159 kb on + strand, within GFF957 at 692.159 kb on + strand, within GFF957 at 692.160 kb on - strand, within GFF957 at 692.160 kb on - strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.161 kb on + strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.162 kb on - strand, within GFF957 at 692.242 kb on + strand, within GFF957 at 692.243 kb on - strand, within GFF957 at 692.243 kb on - strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.404 kb on + strand, within GFF957 at 692.405 kb on - strand, within GFF957 at 692.405 kb on - strand, within GFF957 at 692.500 kb on + strand, within GFF957 at 692.500 kb on + strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.501 kb on - strand, within GFF957 at 692.527 kb on + strand at 692.527 kb on + strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.528 kb on - strand at 692.529 kb on + strand at 692.635 kb on + strand at 692.635 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.651 kb on + strand at 692.652 kb on - strand at 692.707 kb on + strand at 692.707 kb on + strand at 692.708 kb on - strand at 692.752 kb on - strand at 692.794 kb on + strand at 692.794 kb on + strand at 692.795 kb on - strand at 692.908 kb on + strand at 692.909 kb on - strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.971 kb on + strand at 692.972 kb on - strand at 693.004 kb on + strand at 693.004 kb on + strand at 693.005 kb on - strand at 693.133 kb on - strand at 693.133 kb on - strand at 693.133 kb on - strand at 693.169 kb on + strand at 693.170 kb on - strand at 693.172 kb on + strand at 693.172 kb on + strand at 693.173 kb on - strand at 693.173 kb on - strand at 693.173 kb on - strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.176 kb on + strand at 693.221 kb on + strand at 693.222 kb on - strand at 693.222 kb on - strand at 693.222 kb on - strand at 693.233 kb on - strand at 693.250 kb on - strand at 693.250 kb on - strand at 693.326 kb on + strand at 693.327 kb on - strand at 693.327 kb on - strand at 693.351 kb on + strand at 693.351 kb on + strand at 693.352 kb on - strand at 693.371 kb on + strand at 693.381 kb on - strand at 693.381 kb on - strand at 693.381 kb on - strand at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.520 kb on + strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.521 kb on - strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.523 kb on + strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958 at 693.524 kb on - strand, within GFF958
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 691,160 + GFF956 0.51 +0.6 691,160 + GFF956 0.51 -0.3 691,161 - GFF956 0.51 -0.2 691,161 - GFF956 0.51 -0.5 691,161 - GFF956 0.51 +0.9 691,161 - GFF956 0.51 +0.3 691,161 - GFF956 0.51 -0.1 691,229 + GFF956 0.55 -0.8 691,229 + GFF956 0.55 +0.3 691,229 + GFF956 0.55 +0.1 691,230 - GFF956 0.55 +0.3 691,230 - GFF956 0.55 +0.8 691,230 - GFF956 0.55 +0.7 691,264 + GFF956 0.57 -0.8 691,265 - GFF956 0.57 -0.3 691,265 - GFF956 0.57 +2.2 691,361 + GFF956 0.63 +0.3 691,361 + GFF956 0.63 +0.2 691,361 + GFF956 0.63 -0.3 691,361 + GFF956 0.63 -0.1 691,361 + GFF956 0.63 +0.1 691,361 + GFF956 0.63 -0.1 691,361 + GFF956 0.63 +0.2 691,362 - GFF956 0.63 -1.0 691,362 - GFF956 0.63 -1.0 691,362 - GFF956 0.63 -0.4 691,362 - GFF956 0.63 -1.1 691,362 - GFF956 0.63 +0.0 691,362 - GFF956 0.63 -0.0 691,365 + GFF956 0.63 -0.1 691,418 + GFF956 0.66 -0.7 691,418 + GFF956 0.66 +1.2 691,418 + GFF956 0.66 -0.7 691,418 + GFF956 0.66 +0.6 691,418 + GFF956 0.66 -0.6 691,419 - GFF956 0.66 -0.3 691,419 - GFF956 0.66 +0.9 691,419 - GFF956 0.66 -0.2 691,419 - GFF956 0.66 +0.5 691,419 - GFF956 0.66 -0.5 691,419 - GFF956 0.66 +0.2 691,495 - GFF956 0.71 +0.9 691,498 + GFF956 0.71 +0.9 691,498 + GFF956 0.71 -0.1 691,498 + GFF956 0.71 -0.2 691,498 + GFF956 0.71 -1.5 691,499 - GFF956 0.71 -0.6 691,499 - GFF956 0.71 +0.6 691,499 - GFF956 0.71 -0.7 691,499 - GFF956 0.71 -1.2 691,625 + GFF956 0.78 -0.5 691,625 + GFF956 0.78 +0.1 691,625 + GFF956 0.78 -0.3 691,625 + GFF956 0.78 +0.4 691,625 + GFF956 0.78 -0.1 691,625 + GFF956 0.78 -0.3 691,625 + GFF956 0.78 -0.1 691,626 - GFF956 0.78 +1.5 691,626 - GFF956 0.78 -0.1 691,626 - GFF956 0.78 -0.2 691,626 - GFF956 0.78 +0.3 691,626 - GFF956 0.78 -0.2 691,626 - GFF956 0.78 -0.9 691,626 - GFF956 0.78 -1.4 691,626 - GFF956 0.78 +0.2 691,626 - GFF956 0.78 +0.7 691,626 - GFF956 0.78 -0.7 691,626 - GFF956 0.78 -0.0 691,762 + GFF956 0.86 -0.0 691,762 + GFF956 0.86 +1.2 691,762 + GFF956 0.86 -0.4 691,763 - GFF956 0.87 +0.1 691,763 - GFF956 0.87 -0.4 691,763 - GFF956 0.87 -0.3 691,763 - GFF956 0.87 -0.2 691,763 - GFF956 0.87 +0.1 691,763 - GFF956 0.87 -1.5 691,763 - GFF956 0.87 -0.8 691,766 + GFF956 0.87 -0.2 691,937 + -0.6 691,937 + -0.2 691,937 + +0.4 691,937 + -0.6 691,937 + +0.1 691,937 + +0.4 691,937 + -1.4 691,937 + -0.2 691,938 - -0.4 691,938 - +0.1 691,938 - -1.0 691,938 - +0.2 691,938 - +0.9 691,938 - -2.8 691,938 - +0.5 691,961 + -0.2 691,961 + -0.4 691,961 + +0.9 691,961 + +0.6 691,961 + -0.4 691,962 - -2.1 691,962 - -0.2 691,962 - +0.6 691,962 - +0.4 691,962 - +0.3 691,962 - -1.1 691,962 - -0.2 691,962 - -0.2 691,962 - +0.5 691,962 - -0.3 692,110 + GFF957 0.11 -0.1 692,110 + GFF957 0.11 +0.2 692,110 + GFF957 0.11 -0.7 692,111 - GFF957 0.12 -0.3 692,111 - GFF957 0.12 -0.7 692,111 - GFF957 0.12 -0.3 692,111 - GFF957 0.12 +0.1 692,159 + GFF957 0.21 -0.4 692,159 + GFF957 0.21 -0.2 692,160 - GFF957 0.21 +0.8 692,160 - GFF957 0.21 -1.1 692,161 + GFF957 0.21 +0.5 692,161 + GFF957 0.21 +0.1 692,161 + GFF957 0.21 +2.5 692,161 + GFF957 0.21 -0.1 692,162 - GFF957 0.22 +1.5 692,162 - GFF957 0.22 +0.5 692,162 - GFF957 0.22 +0.5 692,162 - GFF957 0.22 +0.1 692,242 + GFF957 0.37 +1.9 692,243 - GFF957 0.37 -0.1 692,243 - GFF957 0.37 +0.1 692,404 + GFF957 0.69 +0.4 692,404 + GFF957 0.69 +1.5 692,404 + GFF957 0.69 +0.5 692,405 - GFF957 0.69 +0.1 692,405 - GFF957 0.69 +0.4 692,500 + GFF957 0.88 +0.6 692,500 + GFF957 0.88 +0.0 692,501 - GFF957 0.88 +0.2 692,501 - GFF957 0.88 -0.0 692,527 + -0.5 692,527 + -0.4 692,528 - -0.5 692,528 - -1.7 692,528 - +0.7 692,528 - +0.0 692,528 - +0.4 692,528 - +0.6 692,528 - -0.5 692,529 + -0.3 692,635 + +0.2 692,635 + +1.1 692,651 + -0.2 692,651 + -0.4 692,651 + -0.4 692,651 + -0.5 692,651 + +0.3 692,652 - -0.2 692,707 + -0.2 692,707 + -0.1 692,708 - +0.0 692,752 - -1.7 692,794 + -3.6 692,794 + -2.7 692,795 - -1.1 692,908 + -2.2 692,909 - -2.1 692,971 + -1.1 692,971 + -2.6 692,971 + -3.2 692,972 - -2.1 693,004 + -4.2 693,004 + -0.7 693,005 - -4.5 693,133 - -2.4 693,133 - -2.4 693,133 - -2.4 693,169 + -3.3 693,170 - -1.1 693,172 + -3.2 693,172 + -3.4 693,173 - -3.7 693,173 - -3.0 693,173 - -2.9 693,176 + -0.1 693,176 + -1.7 693,176 + -0.7 693,176 + -2.9 693,176 + -3.5 693,221 + -1.1 693,222 - -3.9 693,222 - -3.4 693,222 - -4.8 693,233 - -4.8 693,250 - +0.9 693,250 - -1.7 693,326 + -2.1 693,327 - -1.4 693,327 - -2.1 693,351 + -2.2 693,351 + -2.1 693,352 - -0.2 693,371 + -1.1 693,381 - -0.3 693,381 - +0.8 693,381 - +0.8 693,520 + GFF958 0.11 +0.7 693,520 + GFF958 0.11 -0.3 693,520 + GFF958 0.11 -1.0 693,520 + GFF958 0.11 -0.9 693,520 + GFF958 0.11 -0.9 693,520 + GFF958 0.11 +0.1 693,520 + GFF958 0.11 -0.4 693,520 + GFF958 0.11 -0.9 693,521 - GFF958 0.11 -0.3 693,521 - GFF958 0.11 +0.8 693,521 - GFF958 0.11 +0.9 693,523 + GFF958 0.11 -0.5 693,523 + GFF958 0.11 -1.6 693,523 + GFF958 0.11 -0.3 693,524 - GFF958 0.12 +0.0 693,524 - GFF958 0.12 +0.2 693,524 - GFF958 0.12 -0.0 693,524 - GFF958 0.12 +0.9 693,524 - GFF958 0.12 +0.9 693,524 - GFF958 0.12 -0.1 693,524 - GFF958 0.12 -0.5
Or see this region's nucleotide sequence