Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF910 and GFF911 are separated by 15 nucleotides GFF911 and GFF912 are separated by 60 nucleotides
GFF910 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 641,213 to 642,190
GFF910
GFF911 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 642,206 to 643,363
GFF911
GFF912 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 643,424 to 644,593
GFF912
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.239 kb on + strand at 641.239 kb on + strand at 641.240 kb on - strand at 641.263 kb on + strand at 641.349 kb on + strand, within GFF910 at 641.349 kb on + strand, within GFF910 at 641.842 kb on - strand, within GFF910 at 641.902 kb on + strand, within GFF910 at 641.985 kb on + strand, within GFF910 at 642.059 kb on + strand, within GFF910 at 642.060 kb on - strand, within GFF910 at 642.060 kb on - strand, within GFF910 at 642.167 kb on - strand at 642.273 kb on + strand at 642.274 kb on - strand at 642.274 kb on - strand at 642.293 kb on + strand at 642.293 kb on + strand at 642.294 kb on - strand at 642.294 kb on - strand at 642.294 kb on - strand at 642.297 kb on + strand at 642.298 kb on - strand at 642.298 kb on - strand at 642.298 kb on - strand at 642.298 kb on - strand at 642.398 kb on + strand, within GFF911 at 642.398 kb on + strand, within GFF911 at 642.398 kb on + strand, within GFF911 at 642.398 kb on + strand, within GFF911 at 642.398 kb on + strand, within GFF911 at 642.400 kb on + strand, within GFF911 at 642.400 kb on + strand, within GFF911 at 642.400 kb on + strand, within GFF911 at 642.401 kb on - strand, within GFF911 at 642.541 kb on + strand, within GFF911 at 642.542 kb on - strand, within GFF911 at 642.588 kb on + strand, within GFF911 at 642.588 kb on + strand, within GFF911 at 642.729 kb on - strand, within GFF911 at 642.729 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.872 kb on + strand, within GFF911 at 642.872 kb on + strand, within GFF911 at 642.873 kb on - strand, within GFF911 at 642.873 kb on - strand, within GFF911 at 642.971 kb on - strand, within GFF911 at 642.971 kb on - strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.009 kb on - strand, within GFF911 at 643.009 kb on - strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.159 kb on - strand, within GFF911 at 643.159 kb on - strand, within GFF911 at 643.518 kb on + strand at 643.522 kb on - strand at 643.549 kb on - strand, within GFF912 at 643.554 kb on + strand, within GFF912 at 643.660 kb on - strand, within GFF912 at 643.660 kb on - strand, within GFF912 at 643.785 kb on + strand, within GFF912 at 643.969 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 641,239 + +0.0 641,239 + +0.8 641,240 - -2.1 641,263 + -1.3 641,349 + GFF910 0.14 +0.1 641,349 + GFF910 0.14 -0.1 641,842 - GFF910 0.64 -0.8 641,902 + GFF910 0.70 -1.1 641,985 + GFF910 0.79 +2.2 642,059 + GFF910 0.87 -0.6 642,060 - GFF910 0.87 +0.0 642,060 - GFF910 0.87 -1.2 642,167 - -0.2 642,273 + +0.0 642,274 - -0.2 642,274 - +1.2 642,293 + -0.6 642,293 + -0.4 642,294 - +0.0 642,294 - -0.2 642,294 - +0.0 642,297 + +0.7 642,298 - -0.1 642,298 - +0.1 642,298 - -0.1 642,298 - -0.1 642,398 + GFF911 0.17 -0.4 642,398 + GFF911 0.17 +0.9 642,398 + GFF911 0.17 +0.9 642,398 + GFF911 0.17 -1.9 642,398 + GFF911 0.17 -1.6 642,400 + GFF911 0.17 -0.2 642,400 + GFF911 0.17 -0.2 642,400 + GFF911 0.17 -0.5 642,401 - GFF911 0.17 -0.6 642,541 + GFF911 0.29 +1.7 642,542 - GFF911 0.29 +0.9 642,588 + GFF911 0.33 -1.5 642,588 + GFF911 0.33 +0.4 642,729 - GFF911 0.45 +0.3 642,729 - GFF911 0.45 -0.1 642,844 - GFF911 0.55 +0.2 642,844 - GFF911 0.55 -0.3 642,844 - GFF911 0.55 +0.1 642,872 + GFF911 0.58 -0.7 642,872 + GFF911 0.58 -0.8 642,873 - GFF911 0.58 +1.8 642,873 - GFF911 0.58 +0.3 642,971 - GFF911 0.66 +0.1 642,971 - GFF911 0.66 -0.1 643,008 + GFF911 0.69 -0.9 643,008 + GFF911 0.69 +0.8 643,008 + GFF911 0.69 +0.7 643,009 - GFF911 0.69 +0.2 643,009 - GFF911 0.69 +1.2 643,158 + GFF911 0.82 +0.4 643,158 + GFF911 0.82 -0.1 643,158 + GFF911 0.82 -0.6 643,159 - GFF911 0.82 -0.3 643,159 - GFF911 0.82 +0.6 643,518 + -0.1 643,522 - -0.1 643,549 - GFF912 0.11 +0.0 643,554 + GFF912 0.11 +0.6 643,660 - GFF912 0.20 +0.6 643,660 - GFF912 0.20 -0.3 643,785 + GFF912 0.31 -0.2 643,969 - GFF912 0.47 +0.5 644,140 - GFF912 0.61 -0.7 644,140 - GFF912 0.61 +0.0 644,140 - GFF912 0.61 -0.1
Or see this region's nucleotide sequence