Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 426 nucleotides GFF844 and GFF845 are separated by 225 nucleotides GFF845 and GFF846 are separated by 329 nucleotides
GFF843 - FIG005429: hypothetical protein, at 546,843 to 548,054
GFF843
GFF844 - hypothetical protein, at 548,481 to 548,726
GFF844
GFF845 - Prevent host death protein, Phd antitoxin # C, at 548,952 to 549,251
GFF845
GFF846 - hypothetical protein, at 549,581 to 550,774
GFF846
Position (kb) 548
549 Strain fitness (log2 ratio) -2
-1
0
1
2 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.735 kb on - strand, within GFF843 at 547.738 kb on - strand, within GFF843 at 547.920 kb on + strand, within GFF843 at 548.011 kb on + strand at 548.012 kb on + strand at 548.012 kb on + strand at 548.012 kb on + strand at 548.013 kb on - strand at 548.013 kb on - strand at 548.013 kb on - strand at 548.252 kb on - strand at 548.408 kb on + strand at 548.409 kb on - strand at 548.418 kb on + strand at 548.419 kb on - strand at 548.560 kb on - strand, within GFF844 at 548.560 kb on - strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.697 kb on - strand, within GFF844 at 548.803 kb on - strand at 548.803 kb on - strand at 548.803 kb on - strand at 548.815 kb on + strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.890 kb on + strand at 548.891 kb on - strand at 548.891 kb on - strand at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.245 kb on - strand at 549.245 kb on - strand at 549.356 kb on - strand at 549.356 kb on - strand at 549.423 kb on + strand at 549.585 kb on + strand at 549.586 kb on - strand at 549.687 kb on + strand at 549.688 kb on - strand at 549.688 kb on - strand at 549.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 547,606 + GFF843 0.63 +0.3 547,606 + GFF843 0.63 -0.5 547,606 + GFF843 0.63 +0.3 547,607 - GFF843 0.63 +0.5 547,607 - GFF843 0.63 -0.2 547,607 - GFF843 0.63 +0.7 547,607 - GFF843 0.63 -0.6 547,735 - GFF843 0.74 +0.3 547,738 - GFF843 0.74 +1.3 547,920 + GFF843 0.89 -0.1 548,011 + +1.5 548,012 + +1.1 548,012 + +0.5 548,012 + +0.0 548,013 - +0.1 548,013 - +0.2 548,013 - +0.5 548,252 - -0.4 548,408 + -0.0 548,409 - +0.1 548,418 + +0.7 548,419 - -0.2 548,560 - GFF844 0.32 -0.7 548,560 - GFF844 0.32 -0.8 548,696 + GFF844 0.87 -0.1 548,696 + GFF844 0.87 +0.4 548,696 + GFF844 0.87 +0.5 548,697 - GFF844 0.88 -1.2 548,803 - +0.6 548,803 - -0.7 548,803 - -0.0 548,815 + +0.6 548,816 - -0.5 548,816 - +0.3 548,816 - +1.3 548,890 + -0.3 548,891 - -1.0 548,891 - +0.3 549,035 - GFF845 0.28 +0.2 549,035 - GFF845 0.28 -0.1 549,035 - GFF845 0.28 +0.7 549,035 - GFF845 0.28 -0.2 549,035 - GFF845 0.28 -0.2 549,244 + +0.2 549,244 + -1.3 549,244 + +0.2 549,244 + +1.0 549,244 + -1.9 549,244 + +0.4 549,245 - -0.0 549,245 - -0.7 549,356 - -0.6 549,356 - +0.9 549,423 + -0.1 549,585 + +1.0 549,586 - -0.3 549,687 + -0.3 549,688 - +0.2 549,688 - +2.0 549,688 - -0.0
Or see this region's nucleotide sequence