Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF836 and GFF837 are separated by 752 nucleotides GFF837 and GFF838 are separated by 303 nucleotides GFF838 and GFF839 overlap by 8 nucleotides
GFF836 - Integrase, at 537,026 to 538,456
GFF836
GFF837 - Mll5900 protein, at 539,209 to 539,694
GFF837
GFF838 - hypothetical protein, at 539,998 to 540,234
GFF838
GFF839 - hypothetical protein, at 540,227 to 540,355
GFF839
Position (kb) 539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 538.491 kb on + strand at 538.492 kb on - strand at 538.492 kb on - strand at 538.492 kb on - strand at 538.492 kb on - strand at 538.510 kb on + strand at 538.528 kb on + strand at 538.537 kb on + strand at 538.538 kb on - strand at 538.552 kb on - strand at 538.769 kb on - strand at 538.948 kb on + strand at 538.948 kb on + strand at 538.949 kb on - strand at 539.069 kb on + strand at 539.069 kb on + strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.112 kb on + strand at 539.113 kb on - strand at 539.118 kb on + strand at 539.118 kb on + strand at 539.119 kb on - strand at 539.119 kb on - strand at 539.119 kb on - strand at 539.174 kb on + strand at 539.174 kb on + strand at 539.175 kb on - strand at 539.175 kb on - strand at 539.175 kb on - strand at 539.193 kb on + strand at 539.393 kb on + strand, within GFF837 at 539.393 kb on + strand, within GFF837 at 539.393 kb on + strand, within GFF837 at 539.452 kb on + strand, within GFF837 at 539.573 kb on + strand, within GFF837 at 539.754 kb on - strand at 539.754 kb on - strand at 539.872 kb on + strand at 539.872 kb on + strand at 539.872 kb on + strand at 539.873 kb on - strand at 539.873 kb on - strand at 539.873 kb on - strand at 539.958 kb on - strand at 539.999 kb on + strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.041 kb on + strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.221 kb on + strand at 540.222 kb on - strand at 540.499 kb on - strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 538,491 + -0.8 538,492 - +0.1 538,492 - -0.1 538,492 - +2.0 538,492 - +0.0 538,510 + -0.4 538,528 + -0.2 538,537 + -0.2 538,538 - -0.1 538,552 - -0.3 538,769 - +0.1 538,948 + -1.0 538,948 + -0.7 538,949 - -1.5 539,069 + -0.3 539,069 + +0.1 539,070 - +0.1 539,070 - +0.5 539,070 - -0.2 539,070 - -1.4 539,070 - -0.4 539,070 - -0.6 539,070 - +0.7 539,075 + +1.0 539,075 + -0.2 539,075 + +0.1 539,075 + +0.5 539,075 + +0.2 539,076 - +0.2 539,076 - -0.6 539,076 - -0.9 539,076 - -0.7 539,076 - -0.1 539,112 + -0.0 539,113 - -4.0 539,118 + -0.4 539,118 + -0.6 539,119 - -0.2 539,119 - +0.1 539,119 - +0.7 539,174 + -1.0 539,174 + +0.1 539,175 - -0.2 539,175 - -0.4 539,175 - +0.5 539,193 + +0.1 539,393 + GFF837 0.38 -0.2 539,393 + GFF837 0.38 +0.8 539,393 + GFF837 0.38 +0.5 539,452 + GFF837 0.50 +0.5 539,573 + GFF837 0.75 -0.8 539,754 - +0.4 539,754 - +1.1 539,872 + -1.0 539,872 + -0.5 539,872 + +0.4 539,873 - -0.4 539,873 - -0.5 539,873 - +1.0 539,958 - -0.2 539,999 + -0.8 540,000 - +0.8 540,000 - -3.5 540,000 - +1.1 540,000 - +0.4 540,041 + GFF838 0.18 +0.1 540,042 - GFF838 0.19 -1.0 540,042 - GFF838 0.19 -0.4 540,042 - GFF838 0.19 +1.8 540,042 - GFF838 0.19 -0.3 540,221 + -0.4 540,222 - -0.3 540,499 - -0.5 540,657 + -0.3 540,657 + -0.8 540,657 + -0.0 540,657 + -1.4 540,657 + -0.0 540,658 - -1.0 540,658 - -0.0 540,658 - -1.0 540,658 - -0.8 540,658 - +0.2
Or see this region's nucleotide sequence