Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF795 and GFF796 are separated by 34 nucleotides GFF796 and GFF797 are separated by 72 nucleotides GFF797 and GFF798 are separated by 52 nucleotides GFF798 and GFF799 are separated by 19 nucleotides
GFF795 - TRAP-type C4-dicarboxylate transport system, large permease component, at 490,670 to 491,962
GFF795
GFF796 - TRAP-type C4-dicarboxylate transport system, small permease component, at 491,997 to 492,539
GFF796
GFF797 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 492,612 to 493,580
GFF797
GFF798 - Gluconolactonase (EC 3.1.1.17), at 493,633 to 494,535
GFF798
GFF799 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 494,555 to 495,406
GFF799
Position (kb) 492
493
494 Strain fitness (log2 ratio) -1
0
1 at 491.969 kb on + strand at 491.970 kb on - strand at 491.978 kb on + strand at 492.322 kb on + strand, within GFF796 at 492.323 kb on - strand, within GFF796 at 492.323 kb on - strand, within GFF796 at 492.380 kb on - strand, within GFF796 at 492.614 kb on - strand at 492.676 kb on + strand at 492.910 kb on + strand, within GFF797 at 492.917 kb on - strand, within GFF797 at 492.953 kb on - strand, within GFF797 at 493.007 kb on - strand, within GFF797 at 493.162 kb on + strand, within GFF797 at 493.163 kb on - strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.477 kb on + strand, within GFF797 at 493.836 kb on + strand, within GFF798 at 493.963 kb on - strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.118 kb on - strand, within GFF798 at 494.150 kb on + strand, within GFF798
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 491,969 + -0.4 491,970 - +1.0 491,978 + +0.1 492,322 + GFF796 0.60 +0.6 492,323 - GFF796 0.60 +0.1 492,323 - GFF796 0.60 -0.5 492,380 - GFF796 0.71 +0.2 492,614 - +0.6 492,676 + -0.1 492,910 + GFF797 0.31 +1.0 492,917 - GFF797 0.31 +0.1 492,953 - GFF797 0.35 +1.1 493,007 - GFF797 0.41 +0.6 493,162 + GFF797 0.57 -0.3 493,163 - GFF797 0.57 -0.2 493,414 + GFF797 0.83 +0.9 493,414 + GFF797 0.83 +0.6 493,414 + GFF797 0.83 +1.7 493,414 + GFF797 0.83 -0.3 493,477 + GFF797 0.89 +0.0 493,836 + GFF798 0.22 -0.9 493,963 - GFF798 0.37 -0.0 494,027 + GFF798 0.44 +0.2 494,027 + GFF798 0.44 +0.4 494,027 + GFF798 0.44 +1.4 494,028 - GFF798 0.44 +0.2 494,028 - GFF798 0.44 +0.4 494,117 + GFF798 0.54 +0.2 494,117 + GFF798 0.54 +1.0 494,118 - GFF798 0.54 +0.4 494,150 + GFF798 0.57 -0.7
Or see this region's nucleotide sequence