Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF671 and GFF672 are separated by 7 nucleotides GFF672 and GFF673 are separated by 18 nucleotides GFF673 and GFF674 are separated by 10 nucleotides GFF674 and GFF675 are separated by 7 nucleotides
GFF671 - Surface antigen (D15) precursor, at 356,032 to 358,053
GFF671
GFF672 - carbon monoxide dehydrogenase E protein, at 358,061 to 359,248
GFF672
GFF673 - GCN5-related N-acetyltransferase, at 359,267 to 359,860
GFF673
GFF674 - hypothetical protein, at 359,871 to 360,107
GFF674
GFF675 - ATPase associated with various cellular activities, AAA_5, at 360,115 to 360,957
GFF675
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 357.135 kb on - strand, within GFF671 at 357.135 kb on - strand, within GFF671 at 357.137 kb on + strand, within GFF671 at 357.138 kb on - strand, within GFF671 at 357.189 kb on - strand, within GFF671 at 357.248 kb on + strand, within GFF671 at 357.314 kb on + strand, within GFF671 at 357.315 kb on - strand, within GFF671 at 357.315 kb on - strand, within GFF671 at 357.901 kb on + strand at 357.902 kb on - strand at 358.009 kb on + strand at 358.009 kb on + strand at 358.010 kb on - strand at 358.062 kb on + strand at 358.063 kb on - strand at 358.113 kb on + strand at 358.113 kb on + strand at 358.114 kb on - strand at 358.114 kb on - strand at 358.161 kb on + strand at 358.162 kb on - strand at 358.260 kb on + strand, within GFF672 at 358.261 kb on - strand, within GFF672 at 358.286 kb on + strand, within GFF672 at 358.332 kb on + strand, within GFF672 at 358.333 kb on - strand, within GFF672 at 358.344 kb on + strand, within GFF672 at 358.344 kb on + strand, within GFF672 at 358.345 kb on - strand, within GFF672 at 358.417 kb on - strand, within GFF672 at 358.434 kb on + strand, within GFF672 at 358.434 kb on + strand, within GFF672 at 358.435 kb on - strand, within GFF672 at 358.435 kb on - strand, within GFF672 at 358.437 kb on + strand, within GFF672 at 358.720 kb on - strand, within GFF672 at 358.720 kb on - strand, within GFF672 at 359.038 kb on - strand, within GFF672 at 359.068 kb on - strand, within GFF672 at 359.068 kb on - strand, within GFF672 at 359.109 kb on + strand, within GFF672 at 359.109 kb on + strand, within GFF672 at 359.109 kb on + strand, within GFF672 at 359.109 kb on + strand, within GFF672 at 359.109 kb on + strand, within GFF672 at 359.110 kb on - strand, within GFF672 at 359.188 kb on - strand at 359.229 kb on + strand at 359.229 kb on + strand at 359.229 kb on + strand at 359.289 kb on + strand at 359.289 kb on + strand at 359.289 kb on + strand at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.338 kb on - strand, within GFF673 at 359.338 kb on - strand, within GFF673 at 359.445 kb on + strand, within GFF673 at 359.445 kb on + strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.556 kb on + strand, within GFF673 at 359.565 kb on + strand, within GFF673 at 359.566 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.703 kb on + strand, within GFF673
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 357,135 - GFF671 0.55 -0.3 357,135 - GFF671 0.55 -2.3 357,137 + GFF671 0.55 -0.5 357,138 - GFF671 0.55 +0.1 357,189 - GFF671 0.57 -1.2 357,248 + GFF671 0.60 -1.0 357,314 + GFF671 0.63 -0.1 357,315 - GFF671 0.63 -0.2 357,315 - GFF671 0.63 -0.2 357,901 + -0.2 357,902 - +0.7 358,009 + +1.0 358,009 + -1.7 358,010 - -0.2 358,062 + -0.5 358,063 - -0.1 358,113 + +1.2 358,113 + +1.3 358,114 - -1.0 358,114 - -0.3 358,161 + -0.4 358,162 - +0.1 358,260 + GFF672 0.17 -0.1 358,261 - GFF672 0.17 +0.9 358,286 + GFF672 0.19 -1.0 358,332 + GFF672 0.23 +0.4 358,333 - GFF672 0.23 +0.1 358,344 + GFF672 0.24 -0.6 358,344 + GFF672 0.24 -0.1 358,345 - GFF672 0.24 -0.0 358,417 - GFF672 0.30 +0.0 358,434 + GFF672 0.31 -0.1 358,434 + GFF672 0.31 -0.8 358,435 - GFF672 0.31 +0.1 358,435 - GFF672 0.31 +1.5 358,437 + GFF672 0.32 +0.6 358,720 - GFF672 0.55 +0.2 358,720 - GFF672 0.55 +0.0 359,038 - GFF672 0.82 +0.0 359,068 - GFF672 0.85 -0.6 359,068 - GFF672 0.85 -0.2 359,109 + GFF672 0.88 +0.4 359,109 + GFF672 0.88 +0.3 359,109 + GFF672 0.88 +0.4 359,109 + GFF672 0.88 +0.5 359,109 + GFF672 0.88 +0.4 359,110 - GFF672 0.88 +0.0 359,188 - -0.2 359,229 + +0.6 359,229 + +0.1 359,229 + -0.2 359,289 + +0.4 359,289 + -0.6 359,289 + +1.2 359,337 + GFF673 0.12 +0.4 359,337 + GFF673 0.12 -0.5 359,337 + GFF673 0.12 +1.2 359,337 + GFF673 0.12 +0.3 359,338 - GFF673 0.12 +0.8 359,338 - GFF673 0.12 -0.3 359,445 + GFF673 0.30 +0.9 359,445 + GFF673 0.30 +0.1 359,446 - GFF673 0.30 -1.3 359,446 - GFF673 0.30 +0.0 359,446 - GFF673 0.30 +0.3 359,446 - GFF673 0.30 +1.3 359,556 + GFF673 0.49 +0.2 359,565 + GFF673 0.50 -0.1 359,566 - GFF673 0.50 +0.2 359,608 - GFF673 0.57 +0.4 359,608 - GFF673 0.57 -0.8 359,608 - GFF673 0.57 -0.0 359,608 - GFF673 0.57 -0.4 359,703 + GFF673 0.73 +0.3
Or see this region's nucleotide sequence