Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF625 and GFF626 are separated by 142 nucleotides GFF626 and GFF627 are separated by 2 nucleotides GFF627 and GFF628 are separated by 3 nucleotides
GFF625 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 301,491 to 302,594
GFF625
GFF626 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 302,737 to 303,612
GFF626
GFF627 - N-formylglutamate deformylase (EC 3.5.1.68), at 303,615 to 304,478
GFF627
GFF628 - Tricarboxylate transport protein TctC, at 304,482 to 305,462
GFF628
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1 at 302.672 kb on + strand at 302.673 kb on - strand at 302.673 kb on - strand at 302.860 kb on + strand, within GFF626 at 303.252 kb on + strand, within GFF626 at 303.490 kb on - strand, within GFF626 at 303.491 kb on - strand, within GFF626 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.814 kb on + strand, within GFF627 at 303.815 kb on - strand, within GFF627 at 303.815 kb on - strand, within GFF627 at 303.961 kb on + strand, within GFF627 at 304.063 kb on + strand, within GFF627 at 304.255 kb on + strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.523 kb on - strand at 304.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 302,672 + +0.8 302,673 - -0.9 302,673 - +0.2 302,860 + GFF626 0.14 +0.2 303,252 + GFF626 0.59 +0.2 303,490 - GFF626 0.86 -1.1 303,491 - GFF626 0.86 -1.0 303,730 + GFF627 0.13 -1.0 303,730 + GFF627 0.13 -0.3 303,730 + GFF627 0.13 -0.3 303,730 + GFF627 0.13 -0.4 303,731 - GFF627 0.13 -0.2 303,731 - GFF627 0.13 -0.6 303,731 - GFF627 0.13 -0.2 303,814 + GFF627 0.23 -1.0 303,815 - GFF627 0.23 -0.6 303,815 - GFF627 0.23 +0.4 303,961 + GFF627 0.40 -0.8 304,063 + GFF627 0.52 -0.3 304,255 + GFF627 0.74 +0.6 304,256 - GFF627 0.74 -1.3 304,256 - GFF627 0.74 +0.0 304,256 - GFF627 0.74 -1.3 304,523 - +0.3 304,523 - -0.2
Or see this region's nucleotide sequence