Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF595 and GFF596 are separated by 11 nucleotides GFF596 and GFF597 are separated by 24 nucleotides GFF597 and GFF598 are separated by 10 nucleotides
GFF595 - two component, sigma54 specific, transcriptional regulator, Fis family, at 268,922 to 270,427
GFF595
GFF596 - Two-component sensor PilS, at 270,439 to 272,241
GFF596
GFF597 - putative exported protein, at 272,266 to 272,514
GFF597
GFF598 - CcsA-related protein, at 272,525 to 273,328
GFF598
Position (kb) 270
271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 269.451 kb on + strand, within GFF595 at 269.667 kb on + strand, within GFF595 at 269.668 kb on - strand, within GFF595 at 269.668 kb on - strand, within GFF595 at 270.014 kb on + strand, within GFF595 at 270.015 kb on - strand, within GFF595 at 270.114 kb on + strand, within GFF595 at 270.115 kb on - strand, within GFF595 at 270.115 kb on - strand, within GFF595 at 270.165 kb on + strand, within GFF595 at 270.165 kb on + strand, within GFF595 at 270.166 kb on - strand, within GFF595 at 270.360 kb on + strand at 270.361 kb on - strand at 270.584 kb on + strand at 270.585 kb on - strand at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.672 kb on - strand, within GFF596 at 270.672 kb on - strand, within GFF596 at 270.672 kb on - strand, within GFF596 at 271.784 kb on + strand, within GFF596 at 271.784 kb on + strand, within GFF596 at 271.785 kb on - strand, within GFF596 at 271.874 kb on + strand, within GFF596 at 271.875 kb on - strand, within GFF596 at 271.875 kb on - strand, within GFF596 at 271.991 kb on + strand, within GFF596 at 271.991 kb on + strand, within GFF596 at 271.991 kb on + strand, within GFF596 at 271.992 kb on - strand, within GFF596 at 271.992 kb on - strand, within GFF596 at 271.992 kb on - strand, within GFF596 at 272.312 kb on + strand, within GFF597 at 272.313 kb on - strand, within GFF597 at 272.313 kb on - strand, within GFF597 at 272.469 kb on + strand, within GFF597 at 272.469 kb on + strand, within GFF597 at 272.469 kb on + strand, within GFF597 at 272.470 kb on - strand, within GFF597 at 272.471 kb on + strand, within GFF597 at 272.471 kb on + strand, within GFF597 at 272.472 kb on - strand, within GFF597 at 272.472 kb on - strand, within GFF597 at 272.472 kb on - strand, within GFF597 at 272.507 kb on + strand at 272.507 kb on + strand at 272.507 kb on + strand at 272.508 kb on - strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.602 kb on - strand at 272.602 kb on - strand at 272.602 kb on - strand at 272.919 kb on + strand, within GFF598 at 272.919 kb on + strand, within GFF598 at 273.082 kb on - strand, within GFF598 at 273.161 kb on + strand, within GFF598 at 273.162 kb on + strand, within GFF598
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 269,451 + GFF595 0.35 +1.5 269,667 + GFF595 0.49 -0.9 269,668 - GFF595 0.50 -0.7 269,668 - GFF595 0.50 -0.3 270,014 + GFF595 0.73 -0.4 270,015 - GFF595 0.73 +0.1 270,114 + GFF595 0.79 -0.3 270,115 - GFF595 0.79 -0.2 270,115 - GFF595 0.79 -0.5 270,165 + GFF595 0.83 +1.6 270,165 + GFF595 0.83 +0.4 270,166 - GFF595 0.83 +0.7 270,360 + -0.1 270,361 - -0.2 270,584 + -0.4 270,585 - -0.5 270,671 + GFF596 0.13 -0.2 270,671 + GFF596 0.13 +0.7 270,671 + GFF596 0.13 -0.1 270,671 + GFF596 0.13 +0.1 270,672 - GFF596 0.13 +0.3 270,672 - GFF596 0.13 +0.3 270,672 - GFF596 0.13 -0.8 271,784 + GFF596 0.75 +1.0 271,784 + GFF596 0.75 -1.8 271,785 - GFF596 0.75 +0.0 271,874 + GFF596 0.80 -0.3 271,875 - GFF596 0.80 -0.4 271,875 - GFF596 0.80 +0.2 271,991 + GFF596 0.86 -0.9 271,991 + GFF596 0.86 -0.5 271,991 + GFF596 0.86 +0.2 271,992 - GFF596 0.86 -1.0 271,992 - GFF596 0.86 -0.2 271,992 - GFF596 0.86 -1.3 272,312 + GFF597 0.18 -0.1 272,313 - GFF597 0.19 +0.1 272,313 - GFF597 0.19 +0.4 272,469 + GFF597 0.82 +0.1 272,469 + GFF597 0.82 -1.6 272,469 + GFF597 0.82 +0.5 272,470 - GFF597 0.82 -0.2 272,471 + GFF597 0.82 -0.0 272,471 + GFF597 0.82 +0.1 272,472 - GFF597 0.83 -1.0 272,472 - GFF597 0.83 -0.6 272,472 - GFF597 0.83 +1.2 272,507 + +0.6 272,507 + +0.0 272,507 + -0.5 272,508 - -1.5 272,601 + -1.3 272,601 + -0.8 272,601 + -0.8 272,601 + -1.3 272,601 + -1.3 272,602 - -1.2 272,602 - -0.3 272,602 - -1.4 272,919 + GFF598 0.49 -0.2 272,919 + GFF598 0.49 -2.7 273,082 - GFF598 0.69 -0.3 273,161 + GFF598 0.79 +0.6 273,162 + GFF598 0.79 -0.8
Or see this region's nucleotide sequence