Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5351

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,353,701	-		GFF5350	0.75	-0.1
2,353,916	+		GFF5350	0.81	-0.5
2,353,941	-		GFF5350	0.82	-0.4
2,354,636	-				-0.6
2,354,636	-				+0.2
2,354,755	+		GFF5351	0.31	-0.2
2,354,755	+		GFF5351	0.31	+0.0
2,354,755	+		GFF5351	0.31	+0.2
2,354,756	-		GFF5351	0.32	-1.1
2,354,756	-		GFF5351	0.32	+0.8
2,354,848	+		GFF5351	0.51	-0.3
2,354,848	+		GFF5351	0.51	-1.3
2,354,848	+		GFF5351	0.51	-1.1
2,354,849	-		GFF5351	0.51	+0.3
2,354,849	-		GFF5351	0.51	-1.1
2,354,849	-		GFF5351	0.51	-1.8
2,355,178	-				-0.9
2,355,184	+				-0.9
2,355,184	+				-1.4
2,355,184	+				-0.6
2,355,185	-				+0.1
2,355,227	+				+0.8
2,355,227	+				-2.5
2,355,228	-				+0.9
2,355,228	-				+0.3
2,355,255	+				+0.0
2,355,672	+		GFF5352	0.36	-0.1
2,355,673	-		GFF5352	0.36	-0.2
2,355,673	-		GFF5352	0.36	+1.2
2,355,673	-		GFF5352	0.36	+0.0
2,355,673	-		GFF5352	0.36	-0.2
2,355,732	+		GFF5352	0.42	+1.2
2,355,733	-		GFF5352	0.43	-0.4
2,355,733	-		GFF5352	0.43	+0.3
2,355,734	+		GFF5352	0.43	+0.3
2,355,735	-		GFF5352	0.43	+0.4
2,355,735	-		GFF5352	0.43	+1.7
2,355,758	+		GFF5352	0.45	+0.4
2,355,758	+		GFF5352	0.45	-0.3
2,355,759	-		GFF5352	0.45	+0.2
2,355,759	-		GFF5352	0.45	+0.0
2,355,762	+		GFF5352	0.46	-1.4
2,355,762	+		GFF5352	0.46	+0.6
2,355,762	+		GFF5352	0.46	+0.1
2,355,762	+		GFF5352	0.46	-0.2
2,355,762	+		GFF5352	0.46	-0.5
2,355,763	-		GFF5352	0.46	-0.6
2,355,763	-		GFF5352	0.46	-0.3
2,355,819	+		GFF5352	0.51	+0.4
2,355,963	+		GFF5352	0.66	-0.6
2,355,963	+		GFF5352	0.66	-0.2
2,355,963	+		GFF5352	0.66	+1.2
2,355,963	+		GFF5352	0.66	-0.1
2,355,964	-		GFF5352	0.66	+0.8
2,355,964	-		GFF5352	0.66	-1.0
2,355,964	-		GFF5352	0.66	-0.6
2,355,978	+		GFF5352	0.68	-0.1
2,355,978	+		GFF5352	0.68	-0.4
2,355,979	-		GFF5352	0.68	-0.6
2,355,981	+		GFF5352	0.68	-0.6
2,355,981	+		GFF5352	0.68	+0.0
2,355,984	+		GFF5352	0.68	-0.0
2,355,984	+		GFF5352	0.68	+0.2
2,355,985	-		GFF5352	0.68	-0.3
2,355,985	-		GFF5352	0.68	-0.3
2,355,985	-		GFF5352	0.68	-0.2