Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5333

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,332,484	+		GFF5331	0.82	-0.0
2,332,485	-		GFF5331	0.82	-0.9
2,332,485	-		GFF5331	0.82	+0.1
2,332,485	-		GFF5331	0.82	+0.7
2,332,485	-		GFF5331	0.82	-0.2
2,332,711	+				-0.0
2,332,711	+				+0.4
2,332,825	+				+0.1
2,332,825	+				+0.6
2,332,826	-				-0.1
2,332,826	-				-0.1
2,332,841	-				-1.1
2,333,262	-				+0.5
2,333,416	+				-0.7
2,333,450	-				-0.6
2,333,450	-				+0.6
2,333,450	-				+0.2
2,333,508	+		GFF5333	0.21	+0.9
2,333,508	+		GFF5333	0.21	+0.9
2,333,508	+		GFF5333	0.21	+0.9
2,333,508	+		GFF5333	0.21	+0.4
2,333,509	-		GFF5333	0.21	-0.8
2,333,618	-		GFF5333	0.59	-1.4
2,333,632	+		GFF5333	0.63	-1.4
2,333,632	+		GFF5333	0.63	-0.2
2,333,633	-		GFF5333	0.64	+0.3
2,333,695	+		GFF5333	0.85	+0.0
2,333,735	+				-0.3
2,333,735	+				-0.0
2,334,037	+				+0.4
2,334,037	+				+0.9
2,334,038	-				+0.1
2,334,038	-				+0.6
2,334,067	+				-0.3
2,334,181	-				-0.1
2,334,181	-				+1.3
2,334,181	-				-0.2
2,334,234	+				+0.2
2,334,235	-				-1.6
2,334,235	-				-0.2
2,334,624	-				+1.2