Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5275

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,288,706	+		GFF5274	0.20	-0.1
2,288,706	+		GFF5274	0.20	-0.4
2,288,707	-		GFF5274	0.21	+1.0
2,288,797	-		GFF5274	0.31	-0.8
2,288,797	-		GFF5274	0.31	-0.9
2,288,908	-		GFF5274	0.43	-0.4
2,289,303	+		GFF5274	0.87	-0.5
2,289,304	-		GFF5274	0.87	+0.0
2,289,304	-		GFF5274	0.87	+0.8
2,289,304	-		GFF5274	0.87	+0.2
2,289,382	-				+1.3
2,289,433	+				+0.0
2,289,433	+				-0.3
2,289,433	+				+0.4
2,289,433	+				+0.4
2,289,433	+				+0.6
2,289,433	+				-0.0
2,289,433	+				+1.0
2,289,434	-				+1.3
2,289,434	-				-0.5
2,289,434	-				+0.3
2,289,473	+				-0.3
2,289,474	-				+1.0
2,289,663	+		GFF5275	0.22	-0.3
2,289,663	+		GFF5275	0.22	-1.5
2,289,762	+		GFF5275	0.34	-0.2
2,289,763	-		GFF5275	0.34	+0.4
2,289,763	-		GFF5275	0.34	-0.4
2,289,763	-		GFF5275	0.34	-0.3
2,289,763	-		GFF5275	0.34	-0.2
2,289,870	+		GFF5275	0.47	-2.0
2,289,870	+		GFF5275	0.47	+0.1
2,289,871	-		GFF5275	0.47	+0.5
2,289,969	+		GFF5275	0.59	+0.1
2,289,970	-		GFF5275	0.60	+0.2
2,289,970	-		GFF5275	0.60	-1.0
2,289,970	-		GFF5275	0.60	+0.4
2,290,011	+		GFF5275	0.65	-0.2
2,290,149	+		GFF5275	0.82	-0.6
2,290,296	+				-0.2
2,290,296	+				-0.0
2,290,296	+				-0.0
2,290,296	+				-1.2
2,290,297	-				+0.4
2,290,358	+				+0.1
2,290,411	+				-0.4
2,290,444	+				-0.9
2,290,444	+				-0.2
2,290,444	+				-0.2
2,290,444	+				+0.5
2,290,444	+				-0.0
2,290,445	-				-0.1
2,290,445	-				+0.4
2,290,445	-				-0.0
2,290,445	-				-0.2
2,290,445	-				+1.3
2,290,445	-				+0.5
2,290,445	-				+0.1
2,290,445	-				-0.5
2,290,637	+		GFF5276	0.27	-0.0
2,290,637	+		GFF5276	0.27	-0.1
2,290,637	+		GFF5276	0.27	-0.6
2,290,638	-		GFF5276	0.27	-0.4
2,290,638	-		GFF5276	0.27	+0.7
2,290,679	-		GFF5276	0.33	-0.1
2,290,679	-		GFF5276	0.33	-0.1
2,290,715	+		GFF5276	0.38	+0.0
2,290,715	+		GFF5276	0.38	+1.0
2,290,715	+		GFF5276	0.38	+0.3
2,290,716	-		GFF5276	0.38	-0.2
2,290,716	-		GFF5276	0.38	-0.7
2,290,716	-		GFF5276	0.38	-0.2
2,290,716	-		GFF5276	0.38	-0.4
2,290,736	+		GFF5276	0.41	+0.2
2,290,736	+		GFF5276	0.41	+1.1
2,290,736	+		GFF5276	0.41	-1.0
2,290,736	+		GFF5276	0.41	-1.1
2,290,736	+		GFF5276	0.41	+1.0
2,290,737	-		GFF5276	0.41	-0.6
2,290,737	-		GFF5276	0.41	-0.9
2,290,865	+		GFF5276	0.58	-0.0
2,290,866	-		GFF5276	0.59	+0.2