Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5185

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,199,781	+				-0.1
2,199,781	+				-0.3
2,199,781	+				-0.4
2,199,781	+				-0.0
2,199,781	+				-0.1
2,199,781	+				-0.3
2,199,781	+				-0.5
2,199,781	+				+0.0
2,199,782	-		GFF5184	0.10	-0.2
2,199,782	-		GFF5184	0.10	-0.1
2,199,859	+		GFF5184	0.21	-0.4
2,199,859	+		GFF5184	0.21	-0.1
2,199,860	-		GFF5184	0.21	+1.8
2,199,860	-		GFF5184	0.21	-0.3
2,199,860	-		GFF5184	0.21	-0.7
2,200,234	+		GFF5184	0.72	+0.5
2,200,265	-		GFF5184	0.76	-0.3
2,200,265	-		GFF5184	0.76	-0.6
2,200,357	+		GFF5184	0.89	+0.2
2,200,526	+				+0.4
2,200,527	-				+0.4
2,200,691	+		GFF5185	0.21	-0.5
2,200,692	-		GFF5185	0.21	-0.4
2,200,692	-		GFF5185	0.21	-0.6
2,200,692	-		GFF5185	0.21	+1.2
2,200,694	+		GFF5185	0.21	+0.5
2,200,694	+		GFF5185	0.21	+0.3
2,200,694	+		GFF5185	0.21	+0.1
2,200,695	-		GFF5185	0.22	-0.6
2,200,695	-		GFF5185	0.22	-0.8
2,200,695	-		GFF5185	0.22	+0.9
2,200,815	-		GFF5185	0.35	-0.1
2,200,815	-		GFF5185	0.35	-0.2
2,200,946	+		GFF5185	0.49	-0.4
2,200,946	+		GFF5185	0.49	-0.1
2,200,947	-		GFF5185	0.49	+0.2
2,200,986	-		GFF5185	0.54	-1.3
2,200,986	-		GFF5185	0.54	+0.3
2,200,986	-		GFF5185	0.54	+0.1
2,200,986	-		GFF5185	0.54	-0.6
2,200,986	-		GFF5185	0.54	-0.8
2,200,986	-		GFF5185	0.54	-0.6
2,201,429	-				-0.3
2,201,429	-				-0.7
2,201,488	+				+0.1
2,201,488	+				-0.4
2,201,488	+				-0.9
2,201,771	-		GFF5186	0.33	+0.4
2,201,972	-		GFF5186	0.51	+0.2
2,202,172	+		GFF5186	0.69	+0.2
2,202,172	+		GFF5186	0.69	+0.3
2,202,173	-		GFF5186	0.69	+0.1
2,202,173	-		GFF5186	0.69	+0.5
2,202,223	+		GFF5186	0.74	-0.3
2,202,223	+		GFF5186	0.74	-1.9
2,202,223	+		GFF5186	0.74	+0.1
2,202,223	+		GFF5186	0.74	-0.5
2,202,224	-		GFF5186	0.74	+0.0
2,202,224	-		GFF5186	0.74	-0.1
2,202,370	+		GFF5186	0.87	-0.1