Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5171

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,186,649	-				-0.5
2,186,649	-				-0.4
2,186,720	+				-0.5
2,186,721	-				-0.1
2,186,721	-				+1.2
2,186,808	-		GFF5171	0.16	-0.2
2,186,859	-		GFF5171	0.20	-0.1
2,186,859	-		GFF5171	0.20	-0.1
2,186,990	+		GFF5171	0.31	-0.3
2,187,233	+		GFF5171	0.51	+0.2
2,187,261	-		GFF5171	0.53	-0.1
2,187,261	-		GFF5171	0.53	-0.5
2,187,261	-		GFF5171	0.53	-0.8
2,187,332	+		GFF5171	0.59	-0.2
2,187,332	+		GFF5171	0.59	-0.1
2,187,332	+		GFF5171	0.59	+0.2
2,187,333	-		GFF5171	0.59	-0.5
2,187,333	-		GFF5171	0.59	-0.4
2,187,527	+		GFF5171	0.75	-1.1
2,187,527	+		GFF5171	0.75	-0.0
2,187,527	+		GFF5171	0.75	-0.5
2,187,528	-		GFF5171	0.75	+0.1
2,187,590	+		GFF5171	0.80	+0.9
2,187,591	-		GFF5171	0.80	-0.1
2,187,756	-				+0.5
2,187,868	+				+0.4
2,187,868	+				-0.2
2,187,869	-				+0.7
2,187,904	+		GFF5172	0.18	+0.8
2,187,904	+		GFF5172	0.18	-1.4
2,187,905	-		GFF5172	0.18	-0.3
2,187,905	-		GFF5172	0.18	-1.1
2,187,905	-		GFF5172	0.18	-0.1
2,187,913	+		GFF5172	0.20	+0.5
2,187,913	+		GFF5172	0.20	-0.4
2,187,914	-		GFF5172	0.20	+0.4
2,187,914	-		GFF5172	0.20	-0.1
2,187,914	-		GFF5172	0.20	+0.1
2,187,914	-		GFF5172	0.20	-1.4
2,188,030	+		GFF5172	0.47	-0.3
2,188,030	+		GFF5172	0.47	+0.3
2,188,030	+		GFF5172	0.47	+0.7
2,188,031	-		GFF5172	0.47	-0.1
2,188,294	+				-0.4
2,188,295	-				+0.9
2,188,456	+		GFF5173	0.21	-1.6
2,188,457	-		GFF5173	0.21	+0.5
2,188,457	-		GFF5173	0.21	-0.6
2,188,729	+		GFF5173	0.60	-2.5