Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4962

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,978,188	-				-2.6
1,978,928	+				-0.2
1,978,929	-				-1.4
1,978,961	-				-1.1
1,978,962	+				+0.3
1,978,963	-				+0.4
1,979,002	-				-0.5
1,979,002	-				+0.1
1,979,002	-				+0.4
1,979,272	-		GFF4962	0.11	-2.1
1,980,018	+		GFF4962	0.46	-1.7
1,980,019	-		GFF4962	0.46	-1.9
1,980,019	-		GFF4962	0.46	-1.4
1,980,324	+		GFF4962	0.61	-2.7
1,980,768	+		GFF4962	0.82	-1.1
1,980,783	+		GFF4962	0.82	-1.4
1,980,792	+		GFF4962	0.83	-3.2
1,980,792	+		GFF4962	0.83	-1.1
1,980,796	-		GFF4962	0.83	-0.1
1,980,850	-		GFF4962	0.85	-2.1
1,981,039	-				-2.1
1,981,247	-		GFF4963	0.36	-0.5
1,981,247	-		GFF4963	0.36	-0.6
1,981,247	-		GFF4963	0.36	-0.5
1,981,405	+		GFF4963	0.78	-0.4
1,981,406	-		GFF4963	0.78	-0.6
1,981,406	-		GFF4963	0.78	+0.1
1,981,406	-		GFF4963	0.78	+0.1
1,981,406	-		GFF4963	0.78	-0.4
1,981,515	-				+0.0
1,981,839	+		GFF4964	0.52	+0.9
1,982,071	+				+0.2