Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4857

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,862,865	+		GFF4856	0.41	-1.0
1,862,865	+		GFF4856	0.41	-0.1
1,862,866	-		GFF4856	0.41	-1.2
1,862,866	-		GFF4856	0.41	+1.5
1,863,051	+		GFF4856	0.56	-1.2
1,863,051	+		GFF4856	0.56	-0.3
1,863,244	-		GFF4856	0.70	-0.3
1,863,244	-		GFF4856	0.70	-1.6
1,863,244	-		GFF4856	0.70	-1.4
1,863,695	+				+0.3
1,863,696	-				+0.9
1,863,696	-				-2.1
1,864,201	+		GFF4857	0.40	+0.5
1,864,201	+		GFF4857	0.40	+0.2
1,864,201	+		GFF4857	0.40	+0.2
1,864,202	-		GFF4857	0.40	+0.3
1,864,202	-		GFF4857	0.40	+0.9
1,864,307	-		GFF4857	0.50	+1.4
1,864,531	+		GFF4857	0.70	-0.4
1,864,531	+		GFF4857	0.70	+0.4
1,864,531	+		GFF4857	0.70	+0.6
1,864,532	-		GFF4857	0.70	-0.2
1,864,807	+				+0.8
1,864,807	+				+0.4
1,864,807	+				+0.7
1,864,808	-				+0.1
1,864,808	-				+0.5
1,864,808	-				+1.5
1,864,937	+				-0.2
1,865,347	+				-1.1