Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4665 and GFF4666 overlap by 4 nucleotides GFF4666 and GFF4667 are separated by 121 nucleotides GFF4667 and GFF4668 are separated by 16 nucleotides
GFF4665 - Putative deoxyribonuclease YcfH, at 1,615,591 to 1,616,403
GFF4665
GFF4666 - FOG: Ankyrin repeat, at 1,616,400 to 1,617,101
GFF4666
GFF4667 - Tricarboxylate transport protein TctB, at 1,617,223 to 1,617,711
GFF4667
GFF4668 - Tricarboxylate transport membrane protein TctA, at 1,617,728 to 1,619,239
GFF4668
Position (kb)
1617
1618 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1616.243 kb on - strand, within GFF4665 at 1616.243 kb on - strand, within GFF4665 at 1616.287 kb on + strand, within GFF4665 at 1616.287 kb on + strand, within GFF4665 at 1616.287 kb on + strand, within GFF4665 at 1616.287 kb on + strand, within GFF4665 at 1616.287 kb on + strand, within GFF4665 at 1616.288 kb on - strand, within GFF4665 at 1616.288 kb on - strand, within GFF4665 at 1616.288 kb on - strand, within GFF4665 at 1616.288 kb on - strand, within GFF4665 at 1616.288 kb on - strand, within GFF4665 at 1616.427 kb on - strand at 1616.616 kb on + strand, within GFF4666 at 1616.617 kb on - strand, within GFF4666 at 1616.617 kb on - strand, within GFF4666 at 1616.811 kb on + strand, within GFF4666 at 1616.811 kb on + strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.812 kb on - strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.877 kb on + strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1616.878 kb on - strand, within GFF4666 at 1617.054 kb on - strand at 1617.092 kb on + strand at 1617.092 kb on + strand at 1617.092 kb on + strand at 1617.092 kb on + strand at 1617.092 kb on + strand at 1617.092 kb on + strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.093 kb on - strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.147 kb on + strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.148 kb on - strand at 1617.153 kb on + strand at 1617.153 kb on + strand at 1617.153 kb on + strand at 1617.153 kb on + strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.154 kb on - strand at 1617.314 kb on + strand, within GFF4667 at 1617.314 kb on + strand, within GFF4667 at 1617.343 kb on + strand, within GFF4667 at 1617.343 kb on + strand, within GFF4667 at 1617.344 kb on - strand, within GFF4667 at 1617.556 kb on + strand, within GFF4667 at 1617.556 kb on + strand, within GFF4667 at 1617.557 kb on - strand, within GFF4667 at 1617.557 kb on - strand, within GFF4667 at 1617.557 kb on - strand, within GFF4667 at 1617.580 kb on + strand, within GFF4667 at 1617.580 kb on + strand, within GFF4667 at 1617.646 kb on + strand, within GFF4667 at 1617.646 kb on + strand, within GFF4667 at 1617.646 kb on + strand, within GFF4667 at 1617.646 kb on + strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.647 kb on - strand, within GFF4667 at 1617.661 kb on + strand, within GFF4667 at 1617.661 kb on + strand, within GFF4667 at 1617.662 kb on - strand, within GFF4667 at 1617.662 kb on - strand, within GFF4667 at 1617.662 kb on - strand, within GFF4667 at 1617.662 kb on - strand, within GFF4667 at 1617.662 kb on - strand, within GFF4667 at 1617.791 kb on + strand at 1617.791 kb on + strand at 1617.791 kb on + strand at 1617.791 kb on + strand at 1617.791 kb on + strand at 1617.792 kb on - strand at 1617.884 kb on + strand, within GFF4668 at 1617.884 kb on + strand, within GFF4668 at 1617.888 kb on - strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.929 kb on + strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.930 kb on - strand, within GFF4668 at 1617.932 kb on + strand, within GFF4668 at 1617.932 kb on + strand, within GFF4668 at 1617.932 kb on + strand, within GFF4668 at 1617.932 kb on + strand, within GFF4668 at 1617.933 kb on - strand, within GFF4668 at 1617.933 kb on - strand, within GFF4668 at 1617.933 kb on - strand, within GFF4668 at 1617.933 kb on - strand, within GFF4668 at 1617.944 kb on + strand, within GFF4668 at 1617.944 kb on + strand, within GFF4668 at 1618.100 kb on - strand, within GFF4668 at 1618.100 kb on - strand, within GFF4668 at 1618.166 kb on + strand, within GFF4668 at 1618.166 kb on + strand, within GFF4668 at 1618.166 kb on + strand, within GFF4668 at 1618.166 kb on + strand, within GFF4668 at 1618.167 kb on - strand, within GFF4668 at 1618.167 kb on - strand, within GFF4668 at 1618.566 kb on - strand, within GFF4668
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 1,616,243 - GFF4665 0.80 +0.9 1,616,243 - GFF4665 0.80 -1.2 1,616,287 + GFF4665 0.86 -2.4 1,616,287 + GFF4665 0.86 -0.7 1,616,287 + GFF4665 0.86 -2.1 1,616,287 + GFF4665 0.86 -0.6 1,616,287 + GFF4665 0.86 -2.1 1,616,288 - GFF4665 0.86 -0.1 1,616,288 - GFF4665 0.86 -2.5 1,616,288 - GFF4665 0.86 -0.1 1,616,288 - GFF4665 0.86 -0.0 1,616,288 - GFF4665 0.86 -0.6 1,616,427 - +1.5 1,616,616 + GFF4666 0.31 +0.9 1,616,617 - GFF4666 0.31 +0.2 1,616,617 - GFF4666 0.31 +0.2 1,616,811 + GFF4666 0.59 -0.1 1,616,811 + GFF4666 0.59 -0.3 1,616,812 - GFF4666 0.59 +0.3 1,616,812 - GFF4666 0.59 -0.4 1,616,812 - GFF4666 0.59 +0.4 1,616,812 - GFF4666 0.59 +0.9 1,616,812 - GFF4666 0.59 +0.6 1,616,812 - GFF4666 0.59 +0.1 1,616,812 - GFF4666 0.59 -0.5 1,616,877 + GFF4666 0.68 +0.1 1,616,877 + GFF4666 0.68 +0.4 1,616,877 + GFF4666 0.68 +0.1 1,616,877 + GFF4666 0.68 +0.9 1,616,877 + GFF4666 0.68 +0.4 1,616,877 + GFF4666 0.68 -0.6 1,616,877 + GFF4666 0.68 -0.1 1,616,877 + GFF4666 0.68 -0.7 1,616,877 + GFF4666 0.68 -1.1 1,616,878 - GFF4666 0.68 +0.5 1,616,878 - GFF4666 0.68 +0.6 1,616,878 - GFF4666 0.68 +0.1 1,616,878 - GFF4666 0.68 +0.6 1,616,878 - GFF4666 0.68 +0.4 1,616,878 - GFF4666 0.68 +1.5 1,617,054 - -0.1 1,617,092 + -0.4 1,617,092 + +0.3 1,617,092 + +0.5 1,617,092 + +0.0 1,617,092 + +0.5 1,617,092 + +0.4 1,617,093 - -0.5 1,617,093 - -0.3 1,617,093 - +0.9 1,617,093 - +1.5 1,617,093 - -0.2 1,617,093 - +1.1 1,617,093 - +0.9 1,617,147 + +0.7 1,617,147 + +0.4 1,617,147 + -0.6 1,617,147 + +0.8 1,617,147 + +0.9 1,617,147 + +0.2 1,617,147 + +0.7 1,617,148 - +1.7 1,617,148 - +1.0 1,617,148 - +1.0 1,617,148 - +1.0 1,617,148 - +0.8 1,617,148 - +1.2 1,617,148 - +0.5 1,617,148 - +0.1 1,617,153 + +1.3 1,617,153 + +0.4 1,617,153 + +0.3 1,617,153 + +0.9 1,617,154 - +1.1 1,617,154 - +0.6 1,617,154 - +1.2 1,617,154 - +0.5 1,617,154 - +1.2 1,617,154 - +0.2 1,617,154 - +0.4 1,617,314 + GFF4667 0.19 +1.2 1,617,314 + GFF4667 0.19 +0.9 1,617,343 + GFF4667 0.25 +0.8 1,617,343 + GFF4667 0.25 +1.3 1,617,344 - GFF4667 0.25 +0.7 1,617,556 + GFF4667 0.68 +1.2 1,617,556 + GFF4667 0.68 +1.2 1,617,557 - GFF4667 0.68 +0.2 1,617,557 - GFF4667 0.68 +0.2 1,617,557 - GFF4667 0.68 +0.7 1,617,580 + GFF4667 0.73 +1.1 1,617,580 + GFF4667 0.73 +1.0 1,617,646 + GFF4667 0.87 +0.3 1,617,646 + GFF4667 0.87 +1.4 1,617,646 + GFF4667 0.87 +0.7 1,617,646 + GFF4667 0.87 +0.7 1,617,647 - GFF4667 0.87 +0.3 1,617,647 - GFF4667 0.87 +0.5 1,617,647 - GFF4667 0.87 +0.7 1,617,647 - GFF4667 0.87 +0.5 1,617,647 - GFF4667 0.87 +0.6 1,617,647 - GFF4667 0.87 +0.3 1,617,661 + GFF4667 0.90 +0.7 1,617,661 + GFF4667 0.90 +0.9 1,617,662 - GFF4667 0.90 +0.7 1,617,662 - GFF4667 0.90 +0.3 1,617,662 - GFF4667 0.90 +0.7 1,617,662 - GFF4667 0.90 +0.5 1,617,662 - GFF4667 0.90 -0.4 1,617,791 + +1.3 1,617,791 + +1.0 1,617,791 + +0.3 1,617,791 + +1.0 1,617,791 + +1.0 1,617,792 - +0.9 1,617,884 + GFF4668 0.10 +1.2 1,617,884 + GFF4668 0.10 +0.9 1,617,888 - GFF4668 0.11 +0.8 1,617,929 + GFF4668 0.13 +1.2 1,617,929 + GFF4668 0.13 +1.2 1,617,929 + GFF4668 0.13 +1.2 1,617,929 + GFF4668 0.13 +0.9 1,617,929 + GFF4668 0.13 +0.4 1,617,929 + GFF4668 0.13 +0.4 1,617,929 + GFF4668 0.13 +0.6 1,617,929 + GFF4668 0.13 +0.7 1,617,929 + GFF4668 0.13 +0.7 1,617,929 + GFF4668 0.13 +0.7 1,617,929 + GFF4668 0.13 +0.7 1,617,929 + GFF4668 0.13 +0.6 1,617,929 + GFF4668 0.13 +0.4 1,617,929 + GFF4668 0.13 +0.6 1,617,929 + GFF4668 0.13 +0.4 1,617,929 + GFF4668 0.13 +0.5 1,617,929 + GFF4668 0.13 +1.2 1,617,929 + GFF4668 0.13 +3.0 1,617,930 - GFF4668 0.13 +1.2 1,617,930 - GFF4668 0.13 +0.4 1,617,930 - GFF4668 0.13 +1.0 1,617,930 - GFF4668 0.13 +0.5 1,617,930 - GFF4668 0.13 +0.2 1,617,930 - GFF4668 0.13 -0.1 1,617,930 - GFF4668 0.13 +1.1 1,617,930 - GFF4668 0.13 +1.6 1,617,930 - GFF4668 0.13 +0.6 1,617,930 - GFF4668 0.13 +0.9 1,617,930 - GFF4668 0.13 +0.6 1,617,930 - GFF4668 0.13 +0.5 1,617,930 - GFF4668 0.13 +0.5 1,617,930 - GFF4668 0.13 +0.2 1,617,930 - GFF4668 0.13 +0.2 1,617,930 - GFF4668 0.13 +0.7 1,617,930 - GFF4668 0.13 +1.1 1,617,932 + GFF4668 0.13 +0.4 1,617,932 + GFF4668 0.13 +0.7 1,617,932 + GFF4668 0.13 +0.3 1,617,932 + GFF4668 0.13 +2.3 1,617,933 - GFF4668 0.14 +1.3 1,617,933 - GFF4668 0.14 +0.5 1,617,933 - GFF4668 0.14 +0.0 1,617,933 - GFF4668 0.14 +0.4 1,617,944 + GFF4668 0.14 +0.3 1,617,944 + GFF4668 0.14 -0.0 1,618,100 - GFF4668 0.25 +0.2 1,618,100 - GFF4668 0.25 +1.2 1,618,166 + GFF4668 0.29 +0.4 1,618,166 + GFF4668 0.29 +1.0 1,618,166 + GFF4668 0.29 +0.7 1,618,166 + GFF4668 0.29 +0.6 1,618,167 - GFF4668 0.29 +1.0 1,618,167 - GFF4668 0.29 +0.3 1,618,566 - GFF4668 0.55 +0.6
Or see this region's nucleotide sequence