Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4558

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,494,044	-		GFF4557	0.53	+1.6
1,494,044	-		GFF4557	0.53	-0.1
1,494,044	-		GFF4557	0.53	+0.5
1,494,057	+		GFF4557	0.54	-0.7
1,494,058	+		GFF4557	0.54	-0.3
1,494,058	+		GFF4557	0.54	-0.2
1,494,059	-		GFF4557	0.54	+0.2
1,494,059	-		GFF4557	0.54	-0.4
1,494,059	-		GFF4557	0.54	-0.7
1,494,059	-		GFF4557	0.54	-0.1
1,494,059	-		GFF4557	0.54	+0.9
1,494,059	-		GFF4557	0.54	-0.6
1,494,059	-		GFF4557	0.54	+0.3
1,494,193	+		GFF4557	0.62	-0.7
1,494,494	-		GFF4557	0.80	-1.4
1,494,508	+		GFF4557	0.81	-0.1
1,494,508	+		GFF4557	0.81	-0.4
1,495,375	-		GFF4558	0.37	+1.3
1,495,426	+		GFF4558	0.41	-1.2
1,495,426	+		GFF4558	0.41	-0.4
1,496,020	+		GFF4558	0.86	-1.4
1,496,020	+		GFF4558	0.86	-0.5
1,496,020	+		GFF4558	0.86	+1.4
1,496,021	-		GFF4558	0.86	-0.5
1,496,021	-		GFF4558	0.86	+0.9
1,496,021	-		GFF4558	0.86	-0.7
1,496,266	+				-0.3
1,496,266	+				-0.5
1,496,282	+				+0.7
1,496,375	-				-2.3
1,496,452	+				-0.5
1,496,452	+				+0.6
1,496,513	+				-0.2
1,496,513	+				-0.5
1,496,515	-				-0.3
1,496,518	+				-0.1
1,496,518	+				-0.4
1,496,518	+				+0.8
1,496,518	+				+0.1
1,496,518	+				+0.4
1,496,518	+				+1.9
1,496,519	-				+1.2
1,496,519	-				+0.1
1,496,519	-				-0.2
1,496,519	-				-0.1
1,496,519	-				+0.5
1,496,548	-				-1.3
1,496,569	+				-0.3
1,496,936	+		GFF4559	0.39	+1.2
1,497,081	-		GFF4559	0.66	-0.1
1,497,081	-		GFF4559	0.66	+0.9
1,497,182	+		GFF4559	0.84	+0.3
1,497,183	-		GFF4559	0.85	+0.9