Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4541

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,467,130	+		GFF4540	0.11	+0.3
1,467,131	-		GFF4540	0.11	+0.5
1,467,131	-		GFF4540	0.11	-0.5
1,467,190	+		GFF4540	0.18	-0.0
1,467,190	+		GFF4540	0.18	-0.4
1,467,191	-		GFF4540	0.18	-0.1
1,467,191	-		GFF4540	0.18	+0.7
1,467,511	+		GFF4540	0.51	+0.1
1,467,511	+		GFF4540	0.51	+0.3
1,467,511	+		GFF4540	0.51	-0.2
1,467,511	+		GFF4540	0.51	-0.3
1,467,512	-		GFF4540	0.51	+0.4
1,467,695	-		GFF4540	0.70	+0.3
1,467,967	+				-0.7
1,468,138	-		GFF4541	0.15	+0.7
1,468,308	+		GFF4541	0.31	+0.4
1,468,308	+		GFF4541	0.31	+0.2
1,468,309	-		GFF4541	0.31	-0.1
1,468,309	-		GFF4541	0.31	-0.1
1,468,309	-		GFF4541	0.31	+0.5
1,468,421	-		GFF4541	0.41	+0.3
1,468,421	-		GFF4541	0.41	-0.1
1,468,540	-		GFF4541	0.52	-0.9
1,468,540	-		GFF4541	0.52	-1.7
1,468,540	-		GFF4541	0.52	-0.2
1,468,821	+		GFF4541	0.77	-0.0
1,468,822	-		GFF4541	0.77	-0.1
1,468,844	+		GFF4541	0.79	-0.3
1,468,844	+		GFF4541	0.79	+0.5
1,468,845	-		GFF4541	0.80	+0.0
1,468,845	-		GFF4541	0.80	+0.9
1,468,890	+		GFF4541	0.84	+0.8
1,468,901	-		GFF4541	0.85	-0.2
1,468,901	-		GFF4541	0.85	-0.7
1,468,995	+				-0.3
1,468,995	+				-0.2
1,468,996	-				+0.5
1,469,321	+		GFF4542	0.14	-0.4
1,469,321	+		GFF4542	0.14	-0.1
1,469,321	+		GFF4542	0.14	-0.5
1,469,321	+		GFF4542	0.14	+1.1
1,469,322	-		GFF4542	0.15	-1.7
1,469,566	-		GFF4542	0.30	-0.1
1,469,583	-		GFF4542	0.31	+0.4
1,469,651	+		GFF4542	0.35	+0.2
1,469,651	+		GFF4542	0.35	+0.0
1,469,651	+		GFF4542	0.35	-0.9
1,469,651	+		GFF4542	0.35	-0.0
1,469,651	+		GFF4542	0.35	+0.2
1,469,652	-		GFF4542	0.35	-0.3
1,469,654	+		GFF4542	0.36	+0.4
1,469,654	+		GFF4542	0.36	+0.7
1,469,654	+		GFF4542	0.36	-0.3
1,469,654	+		GFF4542	0.36	-0.5
1,469,654	+		GFF4542	0.36	+0.6
1,469,655	-		GFF4542	0.36	-0.5
1,469,855	+		GFF4542	0.48	-0.5
1,469,855	+		GFF4542	0.48	+0.3
1,469,856	-		GFF4542	0.48	+0.3
1,469,856	-		GFF4542	0.48	-1.3
1,469,870	+		GFF4542	0.49	-1.0
1,469,871	-		GFF4542	0.49	+1.2
1,469,924	+		GFF4542	0.53	-0.5
1,469,924	+		GFF4542	0.53	-1.1
1,469,924	+		GFF4542	0.53	-2.1
1,469,924	+		GFF4542	0.53	-0.2
1,469,924	+		GFF4542	0.53	-0.7
1,469,925	-		GFF4542	0.53	+0.3
1,469,925	-		GFF4542	0.53	+0.2
1,469,925	-		GFF4542	0.53	-0.4
1,469,925	-		GFF4542	0.53	-0.3
1,469,990	+		GFF4542	0.57	+0.1
1,469,991	-		GFF4542	0.57	-0.0