Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4528

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,454,846	+				+0.9
1,454,846	+				+0.2
1,454,847	-				+0.2
1,454,847	-				-0.6
1,455,102	+		GFF4527	0.41	-0.4
1,455,102	+		GFF4527	0.41	-2.3
1,455,102	+		GFF4527	0.41	-0.2
1,455,103	-		GFF4527	0.41	-0.7
1,455,103	-		GFF4527	0.41	+0.1
1,455,103	-		GFF4527	0.41	+0.2
1,455,103	-		GFF4527	0.41	+0.1
1,455,103	-		GFF4527	0.41	+0.5
1,455,103	-		GFF4527	0.41	+0.8
1,455,138	+		GFF4527	0.47	+0.2
1,455,444	+				-0.8
1,455,445	-				+0.8
1,455,445	-				+0.5
1,455,446	+				+0.8
1,455,446	+				+0.1
1,455,447	-				-0.1
1,455,447	-				-0.1
1,455,447	-				-0.1
1,455,465	+				-0.2
1,455,466	-				-0.3
1,455,466	-				+0.1
1,455,466	-				-0.1
1,455,476	+				+0.5
1,455,476	+				-0.5
1,455,476	+				+0.1
1,455,476	+				-0.2
1,455,476	+				-0.1
1,455,477	-				+0.7
1,455,477	-				-0.1
1,455,477	-				+0.0
1,455,477	-				-0.2
1,455,477	-				+0.9
1,455,477	-				+0.3
1,455,791	+		GFF4528	0.46	-0.5
1,455,791	+		GFF4528	0.46	+0.9
1,455,792	-		GFF4528	0.46	-0.7
1,455,794	+		GFF4528	0.46	-0.6
1,455,794	+		GFF4528	0.46	-0.4
1,455,794	+		GFF4528	0.46	-0.8
1,455,795	-		GFF4528	0.46	+0.2
1,455,929	-		GFF4528	0.66	-0.2
1,456,217	-		GFF4529	0.12	-0.2
1,456,225	+		GFF4529	0.14	+2.2
1,456,226	-		GFF4529	0.14	-0.6
1,456,579	+		GFF4529	0.90	+0.1
1,456,579	+		GFF4529	0.90	+0.9
1,456,580	-				-1.1
1,456,612	+				+1.9
1,456,612	+				-0.2
1,456,613	-				-0.3
1,456,613	-				+0.7
1,456,613	-				-0.4
1,456,613	-				+0.4
1,456,638	+				+0.0
1,456,638	+				+0.1
1,456,639	-				-0.4
1,456,773	+		GFF4530	0.24	+0.5
1,456,773	+		GFF4530	0.24	-0.2
1,456,773	+		GFF4530	0.24	+0.3
1,456,773	+		GFF4530	0.24	+0.1
1,456,774	-		GFF4530	0.24	-0.5
1,456,774	-		GFF4530	0.24	-0.1
1,456,774	-		GFF4530	0.24	-0.7
1,457,076	+		GFF4530	0.73	+0.5
1,457,076	+		GFF4530	0.73	-0.5
1,457,076	+		GFF4530	0.73	-0.7
1,457,076	+		GFF4530	0.73	-0.4
1,457,077	-		GFF4530	0.73	+0.0
1,457,115	+		GFF4530	0.80	-0.2
1,457,116	-		GFF4530	0.80	-0.1