Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4169

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,083,533	-				+0.3
1,083,533	-				-0.2
1,083,533	-				+0.5
1,083,533	-				+0.2
1,083,612	+				+0.3
1,083,612	+				+0.0
1,083,612	+				+0.7
1,083,613	-				+0.2
1,083,638	+				+2.5
1,083,638	+				-1.4
1,083,639	-				-1.7
1,083,639	-				+0.8
1,083,639	-				-0.8
1,083,659	-				-0.4
1,083,872	+		GFF4168	0.42	+1.0
1,083,872	+		GFF4168	0.42	-0.8
1,083,872	+		GFF4168	0.42	-0.6
1,083,872	+		GFF4168	0.42	+0.2
1,083,872	+		GFF4168	0.42	-0.9
1,083,873	-		GFF4168	0.42	-1.0
1,083,873	-		GFF4168	0.42	+0.1
1,083,873	-		GFF4168	0.42	-0.8
1,083,873	-		GFF4168	0.42	-0.2
1,083,873	-		GFF4168	0.42	-0.5
1,083,873	-		GFF4168	0.42	-0.5
1,083,965	+		GFF4168	0.56	-0.5
1,083,965	+		GFF4168	0.56	-0.5
1,083,965	+		GFF4168	0.56	-0.5
1,083,966	-		GFF4168	0.56	-0.4
1,084,094	+		GFF4168	0.76	-0.5
1,084,095	-		GFF4168	0.76	+0.3
1,084,095	-		GFF4168	0.76	+0.2
1,084,103	+		GFF4168	0.77	-1.0
1,084,315	+				+0.1
1,084,378	+				-0.8
1,084,444	-				-0.2
1,084,615	-				+0.3
1,084,821	+		GFF4169	0.23	+0.6
1,084,821	+		GFF4169	0.23	+0.4
1,084,822	-		GFF4169	0.23	-0.2
1,084,822	-		GFF4169	0.23	+0.6
1,084,822	-		GFF4169	0.23	-1.3
1,084,989	+		GFF4169	0.34	+0.5
1,084,989	+		GFF4169	0.34	-0.1
1,084,989	+		GFF4169	0.34	+0.6
1,084,989	+		GFF4169	0.34	+0.6
1,084,989	+		GFF4169	0.34	+0.4
1,084,990	-		GFF4169	0.34	+1.2
1,084,990	-		GFF4169	0.34	+0.4
1,084,990	-		GFF4169	0.34	-1.6
1,085,041	-		GFF4169	0.37	-0.1
1,085,041	-		GFF4169	0.37	+0.1
1,085,377	+		GFF4169	0.59	-1.2
1,085,377	+		GFF4169	0.59	+0.8
1,085,377	+		GFF4169	0.59	+0.2
1,085,377	+		GFF4169	0.59	-0.0
1,085,377	+		GFF4169	0.59	+0.5
1,085,378	-		GFF4169	0.59	+0.3
1,085,378	-		GFF4169	0.59	-0.1
1,085,378	-		GFF4169	0.59	+0.3
1,085,378	-		GFF4169	0.59	+0.6
1,085,378	-		GFF4169	0.59	+0.1
1,085,378	-		GFF4169	0.59	+0.4
1,085,442	+		GFF4169	0.63	+0.8
1,085,443	-		GFF4169	0.64	-0.8
1,085,544	+		GFF4169	0.70	-0.2
1,085,662	-		GFF4169	0.78	-0.0
1,085,721	+		GFF4169	0.82	-0.8
1,085,784	+		GFF4169	0.86	+0.4
1,085,784	+		GFF4169	0.86	-1.4
1,085,784	+		GFF4169	0.86	+0.2
1,085,785	-		GFF4169	0.86	-0.1
1,085,785	-		GFF4169	0.86	+1.0
1,085,880	+				+1.0
1,085,880	+				+0.6
1,085,880	+				+1.8
1,085,881	-				-1.2
1,085,881	-				-0.5
1,086,209	+		GFF4170	0.13	-0.3
1,086,210	-		GFF4170	0.13	+0.4
1,086,210	-		GFF4170	0.13	+0.3
1,086,210	-		GFF4170	0.13	-0.1
1,086,210	-		GFF4170	0.13	+1.2
1,086,210	-		GFF4170	0.13	+0.3
1,086,212	-		GFF4170	0.13	+1.3
1,086,212	-		GFF4170	0.13	-0.2
1,086,212	-		GFF4170	0.13	-0.2
1,086,212	-		GFF4170	0.13	-1.1
1,086,441	+		GFF4170	0.27	-1.0
1,086,441	+		GFF4170	0.27	-0.1
1,086,441	+		GFF4170	0.27	+0.1
1,086,442	-		GFF4170	0.27	+0.8
1,086,442	-		GFF4170	0.27	-0.1
1,086,442	-		GFF4170	0.27	+0.0
1,086,442	-		GFF4170	0.27	+0.5
1,086,464	+		GFF4170	0.29	+0.2
1,086,464	+		GFF4170	0.29	-0.0
1,086,464	+		GFF4170	0.29	-0.6
1,086,464	+		GFF4170	0.29	-0.2
1,086,464	+		GFF4170	0.29	-0.3
1,086,465	-		GFF4170	0.29	+1.2
1,086,465	-		GFF4170	0.29	+0.2
1,086,465	-		GFF4170	0.29	+1.0
1,086,465	-		GFF4170	0.29	+1.1
1,086,465	-		GFF4170	0.29	-0.0
1,086,551	+		GFF4170	0.34	-0.0
1,086,551	+		GFF4170	0.34	+0.2
1,086,551	+		GFF4170	0.34	-0.2
1,086,551	+		GFF4170	0.34	-0.5
1,086,551	+		GFF4170	0.34	-0.0
1,086,692	-		GFF4170	0.44	-1.4
1,086,785	+		GFF4170	0.50	+1.0
1,086,785	+		GFF4170	0.50	+0.1
1,086,786	-		GFF4170	0.50	-0.2
1,086,803	+		GFF4170	0.51	-0.6
1,086,803	+		GFF4170	0.51	-0.3
1,086,804	-		GFF4170	0.51	+0.7
1,086,804	-		GFF4170	0.51	-0.2
1,086,804	-		GFF4170	0.51	-0.7
1,086,804	-		GFF4170	0.51	+0.1
1,086,804	-		GFF4170	0.51	-0.2
1,086,804	-		GFF4170	0.51	+0.7
1,086,924	-		GFF4170	0.58	+0.2
1,086,924	-		GFF4170	0.58	+1.0
1,086,924	-		GFF4170	0.58	+0.5
1,086,924	-		GFF4170	0.58	+1.3
1,086,924	-		GFF4170	0.58	+0.1
1,086,924	-		GFF4170	0.58	-0.3
1,086,924	-		GFF4170	0.58	-0.3