Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4160

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,075,404	+				+0.7
1,075,405	-				-0.0
1,075,405	-				+0.7
1,075,405	-				+0.7
1,075,435	+				-0.6
1,075,436	-				-0.1
1,075,436	-				+1.0
1,075,437	+				+0.3
1,075,437	+				+0.1
1,075,444	-				-0.2
1,075,450	+				-0.6
1,075,451	-				-0.4
1,075,453	-				+0.8
1,075,481	+				+0.6
1,075,589	+				+0.2
1,075,589	+				+0.5
1,075,589	+				+0.0
1,075,590	-				+0.5
1,075,590	-				-0.7
1,075,596	+				-0.0
1,075,673	+				-0.3
1,075,673	+				-0.1
1,075,674	-				-0.1
1,075,674	-				+0.6
1,075,902	+		GFF4159	0.55	+0.5
1,075,902	+		GFF4159	0.55	-0.5
1,075,903	-		GFF4159	0.55	-0.1
1,075,903	-		GFF4159	0.55	-0.2
1,075,988	+		GFF4159	0.79	-0.7
1,075,989	-		GFF4159	0.80	-0.3
1,076,019	-		GFF4159	0.88	+0.1
1,076,091	+				+0.2
1,076,092	-				-0.3
1,076,092	-				-0.3
1,076,177	+				-0.8
1,076,177	+				+0.4
1,076,177	+				-0.5
1,076,177	+				-0.2
1,076,177	+				+0.2
1,076,178	-				-0.1
1,076,178	-				-0.2
1,076,178	-				+0.1
1,076,178	-				-0.8
1,076,178	-				+0.1
1,076,178	-				-0.0
1,076,294	-				-0.5
1,076,294	-				-0.7
1,076,300	+				+1.0
1,076,336	+				-0.2
1,076,337	-				+0.1
1,076,337	-				-1.0
1,076,337	-				-0.2
1,076,422	+				+1.0
1,076,437	+				+0.6
1,076,437	+				+0.1
1,076,438	-				-0.2
1,076,443	+				+0.2
1,076,443	+				+0.2
1,076,443	+				-1.6
1,076,443	+				+0.4
1,076,443	+				-0.4
1,076,444	-				-1.2
1,076,444	-				+0.5
1,076,444	-				+0.3
1,076,444	-				+0.8
1,076,444	-				-0.1
1,076,482	+		GFF4160	0.11	+1.1
1,076,482	+		GFF4160	0.11	+0.5
1,076,482	+		GFF4160	0.11	+0.3
1,076,483	-		GFF4160	0.11	-0.6
1,076,503	+		GFF4160	0.14	-0.2
1,076,504	-		GFF4160	0.14	-1.0
1,076,634	-		GFF4160	0.30	-0.5
1,076,634	-		GFF4160	0.30	+0.4
1,076,634	-		GFF4160	0.30	+0.1
1,076,644	+		GFF4160	0.31	+1.6
1,076,809	+		GFF4160	0.52	+2.0
1,076,809	+		GFF4160	0.52	+0.2
1,076,810	-		GFF4160	0.52	-0.3
1,076,810	-		GFF4160	0.52	+1.0
1,076,810	-		GFF4160	0.52	+1.0
1,076,810	-		GFF4160	0.52	+0.2
1,076,810	-		GFF4160	0.52	-0.3
1,076,810	-		GFF4160	0.52	+0.2
1,076,815	+		GFF4160	0.53	-0.0
1,076,815	+		GFF4160	0.53	+1.6
1,077,052	+		GFF4160	0.82	+0.0
1,077,224	+				-2.7
1,077,225	-				-3.0
1,077,225	-				-1.3
1,077,260	+				-2.0
1,077,260	+				-2.0
1,077,260	+				-1.5
1,077,260	+				-0.8
1,077,260	+				-0.5
1,077,260	+				-1.1
1,077,260	+				-1.1
1,077,260	+				-0.2
1,077,260	+				-0.8
1,077,261	-				-1.1
1,077,261	-				-1.8
1,077,261	-				-0.6
1,077,332	-		GFF4161	0.22	+1.0
1,077,358	+		GFF4161	0.32	-0.4
1,077,359	-		GFF4161	0.32	+0.8
1,077,359	-		GFF4161	0.32	-0.4
1,077,445	+		GFF4161	0.62	+0.7
1,077,445	+		GFF4161	0.62	-0.2
1,077,445	+		GFF4161	0.62	+1.0
1,077,445	+		GFF4161	0.62	-0.1
1,077,445	+		GFF4161	0.62	-0.0
1,077,445	+		GFF4161	0.62	-1.0
1,077,445	+		GFF4161	0.62	-0.0
1,077,446	-		GFF4161	0.62	-2.4
1,077,446	-		GFF4161	0.62	-0.1
1,077,446	-		GFF4161	0.62	+0.0
1,077,487	+		GFF4161	0.77	+0.4
1,077,511	+		GFF4161	0.85	-0.4
1,077,511	+		GFF4161	0.85	+0.4
1,077,535	+				+0.4
1,077,535	+				-0.4
1,077,536	-				-0.1
1,077,805	+		GFF4162	0.27	-0.0
1,077,806	-		GFF4162	0.27	-0.4
1,077,887	-		GFF4162	0.37	+0.2
1,077,900	+		GFF4162	0.38	+1.8
1,077,945	+		GFF4162	0.43	-0.3
1,077,946	-		GFF4162	0.44	-0.0
1,077,946	-		GFF4162	0.44	+0.4
1,078,119	+		GFF4162	0.63	+0.2
1,078,119	+		GFF4162	0.63	-0.2
1,078,119	+		GFF4162	0.63	-0.5