Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4098

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,007,567	+		GFF4097	0.36	+1.8
1,007,567	+		GFF4097	0.36	-1.3
1,007,567	+		GFF4097	0.36	+0.4
1,007,567	+		GFF4097	0.36	+0.5
1,007,568	-		GFF4097	0.37	+0.2
1,007,568	-		GFF4097	0.37	+0.1
1,007,606	+		GFF4097	0.39	+0.4
1,007,606	+		GFF4097	0.39	+0.4
1,007,607	-		GFF4097	0.40	+1.0
1,007,607	-		GFF4097	0.40	+0.5
1,007,607	-		GFF4097	0.40	+0.1
1,007,607	-		GFF4097	0.40	-0.1
1,007,855	+		GFF4097	0.59	-1.0
1,007,856	-		GFF4097	0.59	-0.9
1,007,856	-		GFF4097	0.59	-0.2
1,007,898	-		GFF4097	0.62	-0.3
1,007,898	-		GFF4097	0.62	-1.0
1,007,993	+		GFF4097	0.69	-0.2
1,007,993	+		GFF4097	0.69	-1.0
1,008,076	+		GFF4097	0.76	+0.4
1,008,077	-		GFF4097	0.76	-0.1
1,008,077	-		GFF4097	0.76	+1.0
1,008,077	-		GFF4097	0.76	-0.4
1,008,102	-		GFF4097	0.78	+1.1
1,008,102	-		GFF4097	0.78	+0.3
1,008,254	+		GFF4097	0.89	-0.0
1,008,254	+		GFF4097	0.89	+0.0
1,008,255	-		GFF4097	0.89	+0.7
1,008,255	-		GFF4097	0.89	-0.6
1,008,390	-				-0.9
1,008,611	+		GFF4098	0.28	+0.5
1,008,611	+		GFF4098	0.28	+1.2
1,008,612	-		GFF4098	0.28	+0.8
1,008,683	+		GFF4098	0.38	-0.4
1,008,683	+		GFF4098	0.38	-1.0
1,008,684	-		GFF4098	0.38	+0.1
1,009,324	+				+1.2
1,009,324	+				+1.0
1,009,325	-				+0.5
1,009,325	-				+1.4
1,009,325	-				-0.2
1,009,393	+		GFF4099	0.13	-0.1
1,009,393	+		GFF4099	0.13	+0.1
1,009,420	+		GFF4099	0.15	-0.4
1,009,420	+		GFF4099	0.15	-0.0
1,009,600	+		GFF4099	0.27	+0.8
1,009,600	+		GFF4099	0.27	+0.0
1,009,600	+		GFF4099	0.27	+0.5
1,009,600	+		GFF4099	0.27	+2.0
1,009,600	+		GFF4099	0.27	-1.0
1,009,601	-		GFF4099	0.27	-1.0
1,009,601	-		GFF4099	0.27	+0.2
1,009,601	-		GFF4099	0.27	+0.1
1,009,601	-		GFF4099	0.27	-0.7
1,009,603	+		GFF4099	0.27	-0.1
1,009,603	+		GFF4099	0.27	+0.4
1,009,603	+		GFF4099	0.27	-0.3
1,009,603	+		GFF4099	0.27	-0.5
1,009,603	+		GFF4099	0.27	+0.1
1,009,603	+		GFF4099	0.27	+0.4
1,009,604	-		GFF4099	0.27	-0.7
1,009,604	-		GFF4099	0.27	-0.4
1,009,604	-		GFF4099	0.27	-0.3
1,009,604	-		GFF4099	0.27	-0.3
1,009,604	-		GFF4099	0.27	-0.1
1,009,844	-		GFF4099	0.42	-0.6
1,009,937	+		GFF4099	0.48	+1.0
1,009,939	+		GFF4099	0.49	-0.0
1,009,940	-		GFF4099	0.49	+0.7
1,009,940	-		GFF4099	0.49	+0.2
1,009,940	-		GFF4099	0.49	+0.3
1,010,020	+		GFF4099	0.54	-0.1
1,010,020	+		GFF4099	0.54	-0.3
1,010,020	+		GFF4099	0.54	+0.1
1,010,021	-		GFF4099	0.54	+1.4
1,010,089	+		GFF4099	0.58	-0.6
1,010,089	+		GFF4099	0.58	+0.5
1,010,089	+		GFF4099	0.58	-0.4
1,010,089	+		GFF4099	0.58	-0.0
1,010,089	+		GFF4099	0.58	-1.6
1,010,090	-		GFF4099	0.58	+0.3
1,010,090	-		GFF4099	0.58	+0.4
1,010,090	-		GFF4099	0.58	-1.0
1,010,090	-		GFF4099	0.58	-0.3
1,010,090	-		GFF4099	0.58	-1.1
1,010,090	-		GFF4099	0.58	-0.3
1,010,090	-		GFF4099	0.58	+0.1
1,010,090	-		GFF4099	0.58	+0.1