Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4092

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4090 and GFF4091 overlap by 4 nucleotidesGFF4091 and GFF4092 overlap by 4 nucleotidesGFF4092 and GFF4093 are separated by 6 nucleotidesGFF4093 and GFF4094 are separated by 5 nucleotides GFF4090 - Flagellar biosynthesis protein FliQ, at 1,003,428 to 1,003,697 GFF4090 GFF4091 - Flagellar biosynthesis protein FliP, at 1,003,694 to 1,004,488 GFF4091 GFF4092 - Flagellar motor switch protein FliN, at 1,004,485 to 1,004,865 GFF4092 GFF4093 - hypothetical protein, at 1,004,872 to 1,005,753 GFF4093 GFF4094 - Flagellar hook-basal body complex protein FliE, at 1,005,759 to 1,006,070 GFF4094 Position (kb) 1004 1005Strain fitness (log2 ratio) -1 0 1at 1003.698 kb on - strandat 1004.088 kb on + strand, within GFF4091at 1004.089 kb on - strand, within GFF4091at 1004.323 kb on - strand, within GFF4091at 1004.540 kb on + strand, within GFF4092at 1004.540 kb on + strand, within GFF4092at 1004.541 kb on - strand, within GFF4092

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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1,003,698 - -0.0
1,004,088 + GFF4091 0.50 -0.6
1,004,089 - GFF4091 0.50 +0.0
1,004,323 - GFF4091 0.79 +0.2
1,004,540 + GFF4092 0.14 +0.0
1,004,540 + GFF4092 0.14 -0.5
1,004,541 - GFF4092 0.15 -1.1

Or see this region's nucleotide sequence