Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4025 and GFF4026 are separated by 60 nucleotides GFF4026 and GFF4027 are separated by 12 nucleotides GFF4027 and GFF4028 are separated by 72 nucleotides GFF4028 and GFF4029 are separated by 6 nucleotides
GFF4025 - Transcriptional regulator, AraC family, at 940,029 to 941,009
GFF4025
GFF4026 - Cytosine deaminase (EC 3.5.4.1), at 941,070 to 941,510
GFF4026
GFF4027 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 941,523 to 942,251
GFF4027
GFF4028 - hypothetical protein, at 942,324 to 942,458
GFF4028
GFF4029 - Aerotaxis sensor receptor protein, at 942,465 to 944,009
GFF4029
Position (kb) 941
942
943 Strain fitness (log2 ratio) -1
0
1 at 941.269 kb on - strand, within GFF4026 at 941.286 kb on + strand, within GFF4026 at 941.374 kb on - strand, within GFF4026 at 941.936 kb on - strand, within GFF4027 at 942.044 kb on - strand, within GFF4027 at 942.369 kb on + strand, within GFF4028 at 942.370 kb on - strand, within GFF4028 at 942.795 kb on + strand, within GFF4029 at 942.852 kb on + strand, within GFF4029 at 942.852 kb on + strand, within GFF4029
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 941,269 - GFF4026 0.45 -0.0 941,286 + GFF4026 0.49 -0.3 941,374 - GFF4026 0.69 +0.2 941,936 - GFF4027 0.57 +0.1 942,044 - GFF4027 0.71 +0.3 942,369 + GFF4028 0.33 +0.1 942,370 - GFF4028 0.34 +0.7 942,795 + GFF4029 0.21 -0.7 942,852 + GFF4029 0.25 -0.4 942,852 + GFF4029 0.25 +0.4
Or see this region's nucleotide sequence