Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3995 and GFF3996 are separated by 8 nucleotides GFF3996 and GFF3997 overlap by 4 nucleotides GFF3997 and GFF3998 overlap by 4 nucleotides
GFF3995 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 910,764 to 911,984
GFF3995
GFF3996 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 911,993 to 912,949
GFF3996
GFF3997 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 912,946 to 913,935
GFF3997
GFF3998 - Cobyric acid synthase (EC 6.3.5.10), at 913,932 to 915,383
GFF3998
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 912.104 kb on + strand, within GFF3996 at 912.105 kb on - strand, within GFF3996 at 912.537 kb on - strand, within GFF3996 at 912.812 kb on + strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.888 kb on + strand at 912.889 kb on - strand at 912.889 kb on - strand at 913.099 kb on + strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.249 kb on + strand, within GFF3997 at 913.418 kb on - strand, within GFF3997 at 913.418 kb on - strand, within GFF3997 at 913.532 kb on - strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 914.013 kb on + strand at 914.013 kb on + strand at 914.014 kb on - strand at 914.109 kb on + strand, within GFF3998 at 914.457 kb on + strand, within GFF3998
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 912,104 + GFF3996 0.12 +0.3 912,105 - GFF3996 0.12 +2.5 912,537 - GFF3996 0.57 +1.4 912,812 + GFF3996 0.86 -1.0 912,813 - GFF3996 0.86 +0.7 912,813 - GFF3996 0.86 +0.4 912,813 - GFF3996 0.86 -0.2 912,813 - GFF3996 0.86 +1.5 912,888 + -0.3 912,889 - -0.3 912,889 - +0.1 913,099 + GFF3997 0.15 +0.2 913,100 - GFF3997 0.16 +1.4 913,100 - GFF3997 0.16 -0.5 913,100 - GFF3997 0.16 -0.1 913,249 + GFF3997 0.31 -0.1 913,418 - GFF3997 0.48 -0.9 913,418 - GFF3997 0.48 -0.2 913,532 - GFF3997 0.59 +0.2 913,756 + GFF3997 0.82 -0.2 913,756 + GFF3997 0.82 +1.0 913,756 + GFF3997 0.82 +0.3 914,013 + -0.2 914,013 + +0.0 914,014 - +0.6 914,109 + GFF3998 0.12 -3.0 914,457 + GFF3998 0.36 +1.0
Or see this region's nucleotide sequence