Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3836

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3835 and GFF3836 are separated by 8 nucleotidesGFF3836 and GFF3837 overlap by 4 nucleotides GFF3835 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 742,458 to 743,477 GFF3835 GFF3836 - DNA recombination protein RmuC, at 743,486 to 744,874 GFF3836 GFF3837 - putative inner membrane efflux protein, at 744,871 to 746,049 GFF3837 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1at 742.725 kb on + strand, within GFF3835at 742.725 kb on + strand, within GFF3835at 742.725 kb on + strand, within GFF3835at 742.726 kb on - strand, within GFF3835at 743.016 kb on + strand, within GFF3835at 743.016 kb on + strand, within GFF3835at 743.017 kb on - strand, within GFF3835at 743.017 kb on - strand, within GFF3835at 743.070 kb on + strand, within GFF3835at 743.070 kb on + strand, within GFF3835at 743.071 kb on - strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.287 kb on - strand, within GFF3835at 743.287 kb on - strand, within GFF3835at 743.418 kb on + strandat 744.207 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.447 kb on - strand, within GFF3836at 744.447 kb on - strand, within GFF3836at 744.506 kb on + strand, within GFF3836at 744.506 kb on + strand, within GFF3836at 744.506 kb on + strand, within GFF3836at 744.506 kb on + strand, within GFF3836at 744.986 kb on - strandat 745.178 kb on + strand, within GFF3837at 745.178 kb on + strand, within GFF3837at 745.255 kb on + strand, within GFF3837at 745.732 kb on + strand, within GFF3837at 745.733 kb on - strand, within GFF3837at 745.733 kb on - strand, within GFF3837

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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742,725 + GFF3835 0.26 +0.3
742,725 + GFF3835 0.26 -0.1
742,725 + GFF3835 0.26 -1.5
742,726 - GFF3835 0.26 +0.1
743,016 + GFF3835 0.55 +0.5
743,016 + GFF3835 0.55 +0.8
743,017 - GFF3835 0.55 -0.7
743,017 - GFF3835 0.55 -0.0
743,070 + GFF3835 0.60 +0.2
743,070 + GFF3835 0.60 -1.2
743,071 - GFF3835 0.60 +0.1
743,286 + GFF3835 0.81 +0.6
743,286 + GFF3835 0.81 -1.9
743,286 + GFF3835 0.81 -0.3
743,287 - GFF3835 0.81 -1.5
743,287 - GFF3835 0.81 -1.1
743,418 + -0.3
744,207 - GFF3836 0.52 -0.6
744,336 - GFF3836 0.61 -0.5
744,336 - GFF3836 0.61 -0.6
744,336 - GFF3836 0.61 -0.4
744,446 + GFF3836 0.69 -1.1
744,446 + GFF3836 0.69 -0.2
744,446 + GFF3836 0.69 +0.7
744,446 + GFF3836 0.69 -0.8
744,446 + GFF3836 0.69 -1.2
744,446 + GFF3836 0.69 -0.2
744,446 + GFF3836 0.69 -0.8
744,447 - GFF3836 0.69 +0.4
744,447 - GFF3836 0.69 -0.4
744,506 + GFF3836 0.73 -0.1
744,506 + GFF3836 0.73 +0.1
744,506 + GFF3836 0.73 -0.3
744,506 + GFF3836 0.73 +0.9
744,986 - -0.7
745,178 + GFF3837 0.26 -0.1
745,178 + GFF3837 0.26 -1.4
745,255 + GFF3837 0.33 +0.4
745,732 + GFF3837 0.73 -0.2
745,733 - GFF3837 0.73 -0.8
745,733 - GFF3837 0.73 +0.6

Or see this region's nucleotide sequence