Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3647 and GFF3648 are separated by 124 nucleotides GFF3648 and GFF3649 are separated by 3 nucleotides GFF3649 and GFF3650 are separated by 63 nucleotides
GFF3647 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 531,204 to 533,075
GFF3647
GFF3648 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 533,200 to 536,487
GFF3648
GFF3649 - Inositol-1-monophosphatase (EC 3.1.3.25), at 536,491 to 537,375
GFF3649
GFF3650 - tRNA:Cm32/Um32 methyltransferase, at 537,439 to 538,254
GFF3650
Position (kb) 533
534
535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.654 kb on + strand, within GFF3647 at 532.654 kb on + strand, within GFF3647 at 532.655 kb on - strand, within GFF3647 at 532.655 kb on - strand, within GFF3647 at 532.816 kb on + strand, within GFF3647 at 532.817 kb on - strand, within GFF3647 at 532.981 kb on + strand at 532.982 kb on - strand at 532.982 kb on - strand at 533.112 kb on + strand at 533.112 kb on + strand at 533.113 kb on - strand at 533.546 kb on + strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.578 kb on + strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 534.064 kb on + strand, within GFF3648 at 534.065 kb on - strand, within GFF3648 at 534.065 kb on - strand, within GFF3648 at 534.065 kb on - strand, within GFF3648 at 534.265 kb on + strand, within GFF3648 at 534.451 kb on + strand, within GFF3648 at 534.451 kb on + strand, within GFF3648 at 534.451 kb on + strand, within GFF3648 at 534.451 kb on + strand, within GFF3648 at 534.451 kb on + strand, within GFF3648 at 534.551 kb on - strand, within GFF3648 at 534.571 kb on + strand, within GFF3648 at 534.571 kb on + strand, within GFF3648 at 534.572 kb on - strand, within GFF3648 at 534.572 kb on - strand, within GFF3648 at 534.572 kb on - strand, within GFF3648 at 534.572 kb on - strand, within GFF3648 at 535.069 kb on + strand, within GFF3648 at 535.070 kb on - strand, within GFF3648 at 535.070 kb on - strand, within GFF3648 at 535.070 kb on - strand, within GFF3648 at 535.252 kb on + strand, within GFF3648 at 535.348 kb on + strand, within GFF3648 at 535.348 kb on + strand, within GFF3648 at 535.348 kb on + strand, within GFF3648 at 535.348 kb on + strand, within GFF3648 at 535.489 kb on + strand, within GFF3648 at 535.490 kb on - strand, within GFF3648 at 535.541 kb on + strand, within GFF3648 at 535.542 kb on - strand, within GFF3648 at 535.542 kb on - strand, within GFF3648 at 535.542 kb on - strand, within GFF3648 at 535.542 kb on - strand, within GFF3648 at 535.606 kb on + strand, within GFF3648 at 535.606 kb on + strand, within GFF3648 at 535.610 kb on - strand, within GFF3648 at 535.853 kb on - strand, within GFF3648 at 536.212 kb on + strand at 536.212 kb on + strand at 536.213 kb on - strand at 536.272 kb on + strand at 536.272 kb on + strand at 536.272 kb on + strand at 536.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 532,447 + GFF3647 0.66 -0.1 532,447 + GFF3647 0.66 +1.7 532,447 + GFF3647 0.66 +0.3 532,447 + GFF3647 0.66 +0.3 532,448 - GFF3647 0.66 -0.3 532,448 - GFF3647 0.66 +0.7 532,448 - GFF3647 0.66 +0.3 532,654 + GFF3647 0.77 -0.1 532,654 + GFF3647 0.77 -0.6 532,655 - GFF3647 0.78 +0.2 532,655 - GFF3647 0.78 -0.1 532,816 + GFF3647 0.86 -2.8 532,817 - GFF3647 0.86 +0.8 532,981 + +0.2 532,982 - +0.4 532,982 - +0.9 533,112 + -0.1 533,112 + +0.6 533,113 - -0.2 533,546 + GFF3648 0.11 -0.9 533,547 - GFF3648 0.11 +0.5 533,547 - GFF3648 0.11 -0.9 533,547 - GFF3648 0.11 -0.2 533,547 - GFF3648 0.11 +0.9 533,578 + GFF3648 0.11 -0.1 533,579 - GFF3648 0.12 -0.1 533,579 - GFF3648 0.12 -0.1 533,579 - GFF3648 0.12 +0.1 533,579 - GFF3648 0.12 -0.1 534,064 + GFF3648 0.26 +0.1 534,065 - GFF3648 0.26 -0.9 534,065 - GFF3648 0.26 -0.5 534,065 - GFF3648 0.26 +0.1 534,265 + GFF3648 0.32 -0.6 534,451 + GFF3648 0.38 -0.2 534,451 + GFF3648 0.38 -0.3 534,451 + GFF3648 0.38 +0.1 534,451 + GFF3648 0.38 +0.7 534,451 + GFF3648 0.38 +0.3 534,551 - GFF3648 0.41 -0.3 534,571 + GFF3648 0.42 -1.5 534,571 + GFF3648 0.42 +0.3 534,572 - GFF3648 0.42 +0.5 534,572 - GFF3648 0.42 +0.1 534,572 - GFF3648 0.42 +0.1 534,572 - GFF3648 0.42 +0.9 535,069 + GFF3648 0.57 +0.9 535,070 - GFF3648 0.57 -0.1 535,070 - GFF3648 0.57 +1.3 535,070 - GFF3648 0.57 -0.8 535,252 + GFF3648 0.62 +0.0 535,348 + GFF3648 0.65 +0.1 535,348 + GFF3648 0.65 -0.2 535,348 + GFF3648 0.65 +0.0 535,348 + GFF3648 0.65 -0.4 535,489 + GFF3648 0.70 +0.1 535,490 - GFF3648 0.70 -1.1 535,541 + GFF3648 0.71 +0.4 535,542 - GFF3648 0.71 +0.4 535,542 - GFF3648 0.71 +0.5 535,542 - GFF3648 0.71 +0.0 535,542 - GFF3648 0.71 +0.2 535,606 + GFF3648 0.73 +1.3 535,606 + GFF3648 0.73 -0.6 535,610 - GFF3648 0.73 +0.2 535,853 - GFF3648 0.81 +0.0 536,212 + -0.3 536,212 + -0.7 536,213 - -1.1 536,272 + +0.0 536,272 + -0.4 536,272 + -0.2 536,272 + -2.3
Or see this region's nucleotide sequence